barSeed - Barley Seed Development Database

Probe CUST_779_PI390587928

Source Contig U35_22891

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_779_PI390587928	Hv_44K_v2	CACTCTTATGAAGGGTTTTTATCACTTTTGCCATCGGTTGTATAACACTAATCAGTTTTG	633	GeneList: yellow MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	3.150	2.962	1.310	0.518	0.188	0.167
Raw	113.980	183.797	66.093	44.019	3.086	3.461

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_60090.1	2962	2e-24	2869 - 2928	100	60 / 60	plus	ABC40405
JLOC1	JLOC1_39151.2	3031	8e-25	2783 - 2842	100	60 / 60	plus
JLOC1	JLOC1_39151.1	3097	8e-25	2849 - 2908	100	60 / 60	plus
Harvest21	ABC40405	639	3e-25	60 - 119	100	60 / 60	minus	ABC40405
Harvest35	U35_22891	752	3e-25	634 - 693	100	60 / 60	plus

Contig Sequence (752 bp)

>U35_22891 752 Hv_44K_v2
GTTTCTTGATCCACTGGCTGCAAAAACAGTCCTGGAATCCAATATGAATATTACACTCAT
TCCGCTTACCGCACAACGAAAAGCTAATTCATTCGGGGCAGTCCTGGAAGCCTTGGAGCA
AACCAGGCAAACTCCTGAATCAAAATTCGTCCAACAGTTGTTCTCATTGTTGAAGAAACT
TCAGAGCAAAGAGAAGCTGTATCACCATGTGGATATATTTTTGGGAGAAGTTCTTGGTGC
GGTTTACATGGTTCAAGGATCTAACCTGAAATCCACAGTAAAGCTGAAGCGAATAAGCAT
CCTTGCCAATACAACGAAAAGCACAGATGGGCAGCTTGTGGTCAGCAAGCAGAGTACGAA
GCTGGTGCATGTGCTAAGTGATTTCAATGTTGGAATATATTACAATCGATTGGCAGATTC
TTTAACGAACAAGAAAAATTCTGCCGTTGTTGCGAGCTTTGAAGAACAAAAGGCAATTTG
GAGCAGGCCGCCAAATAACTCAGGGCCTGGACATAACAAATTCTTATAGTAGTACCGCTT
AAAAAAGATTATATATAAGATACCAAAAATCCACTTGGAGAACAGAATATTTACGTCTTA
GCATCCAAGTAAAAGGAACATTTAATAGAGTTACACTCTTATGAAGGGTTTTTATCACTT
TTGCCATCGGTTGTATAACACTAATCAGTTTTGCTACTAAATTTTTCACTTAATCAAATA
TTCCACTGTTCCATTAAAAAAAAAAAAAAAAA

Homology of Contig U35_22891 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os05g33630.3	747	7e-59	protein\|inosine-uridine preferring nucleoside hydrolase family protein, putative, expressed
Brachypodium v1_2	Bradi2g25630.1	851	6e-78
Arabidopsis v10	None