barSeed - Barley Seed Development Database

Probe CUST_7775_PI390587928

Source Contig U35_1216

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_7775_PI390587928	Hv_44K_v2	TTGGCTAAATTTCTTCCTACCACGCATTTTTCTTGATTGATGCTATCTTGTGGCTTGATA	770	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_52549.3	4840	2e-24	3118 - 3177	100	60 / 60	minus	ABC04072 ABC24660
MLOC	MLOC_52549.4	5401	2e-24	3679 - 3738	100	60 / 60	minus	ABC04072 ABC24660
JLOC1	JLOC1_33686.1	1575	8e-25	1002 - 1061	100	60 / 60	plus
Harvest21	ABC04072	942	3e-25	771 - 830	100	60 / 60	plus	ABC04072
Harvest21	ABC50051	169	2e-22	35 - 92	98	57 / 58	minus
Harvest35	U35_1216	899	3e-25	771 - 830	100	60 / 60	plus
Harvest35	U35_1215	1006	3e-25	816 - 875	100	60 / 60	plus

Contig Sequence (899 bp)

>U35_1216 899 Hv_44K_v2
GTTCAGTTCAGTTGCTTATTCTGTTGTCTACTCTGCACATACTGAGAGCAAGATGGGTGG
CAAGGTTCTTCTGATGAGTGCTGTCTTGGTGGGGCTTGTTTCACTGAGCTCCTGCAGGAG
CCTGGGAGAGTTGCATGAGCAGAAGACCTACTCTTCTTCTACGCCCCACTATGGGGGCTC
ACCAACTCCCTCGCATGGGTCAGGAGGAGGCTACAACCCGACACCGACACCAACTTACGG
TACTACACCAACGCCGACGCCATCTTACGGCACTACACCGACGCCGACGCCATCTTACGG
CACTACACCGACGCCATCTTATGGCACTACACCGACGCCATCTTACGGCACTACACCGAG
CACCCCAAGTACACCTTCCCATGAAGTCCCTGCAAGTCCAAAGAAGCATGGATTCATTGG
ATCCTGCGACTTCTGGAAGAATCACCCAGACGCTATAATTGCAGCTATTGGGTCCCTTGG
CAACATCGGCAAGACATTTGGTGCTGCATGCAGTATGATAGGTGGCAAGAAGCTAGGAAA
TATGCATGATGCACTCTCAAACACTAGAACTGATGGTATTGGCGCCCTGATACGCGAGGG
GGCAGCTGCATACCTCAACTCCATTGTGAACAACAAGTTCCCATTTACAACCCAGCAGGT
GAAGGACTGCATCGTCGTGGCCGCGACCTCTGATAGTGCTGCTTCTGCCCAAGCTGGGGT
CTTCAAGAAGGCAAATGAATCCCACTACTAGTTTTAGTCATGGGTGTTTCTTGGCTAAAT
TTCTTCCTACCACGCATTTTTCTTGATTGATGCTATCTTGTGGCTTGATATATTTATCGT
ATTTTTTGTTGATTTATCATGTATATCACTATCTAATATATTCTGAGTGTAATAAATCC

Homology of Contig U35_1216 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os02g13660.1	220	3e-54	protein\|meiosis 5, putative, expressed
Brachypodium v1_2	Bradi3g08820.2	186	5e-64
Arabidopsis v10	None