- Probe CUST_7773_PI390587928
- Source Contig U35_1218
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_7773_PI390587928 | Hv_44K_v2 | GAGGTTCTTCCTTGGCAGTGTGAGCAACTACTGTAGCCACCATGCAAAGTGCCCGGTTCT | 520 | GeneList: saddlebrown MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 0.280 | 0.334 | 0.851 | 1.567 | 1.249 | 1.454 |
| Raw | 1939.005 | 3376.973 | 8080.160 | 22669.203 | 6514.383 | 8239.723 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | MLOC_69539.3 | 1146 | 2e-24 | 688 - 747 | 100 | 60 / 60 | plus | ABC02390 ABC38734 |
| MLOC | MLOC_69539.5 | 726 | 2e-24 | 268 - 327 | 100 | 60 / 60 | plus | ABC02390 ABC38734 |
| MLOC | MLOC_69539.4 | 952 | 2e-24 | 543 - 602 | 100 | 60 / 60 | plus | ABC02390 ABC38734 |
| MLOC | MLOC_69539.2 | 2251 | 6e-24 | 1773 - 1831 | 100 | 59 / 59 | plus | ABC02390 ABC38734 |
| JLOC1 | JLOC1_46079.2 | 1068 | 8e-25 | 607 - 666 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_46079.1 | 1062 | 8e-25 | 601 - 660 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC02390 | 883 | 3e-25 | 564 - 623 | 100 | 60 / 60 | plus | ABC02390 |
| Harvest21 | ABC02376 | 611 | 3e-25 | 486 - 545 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_1221 | 883 | 3e-25 | 564 - 623 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_1218 | 580 | 3e-25 | 521 - 580 | 100 | 60 / 60 | plus |
Contig Sequence (580 bp)
>U35_1218 580 Hv_44K_v2 CTTCAGAGTTCAGACAGAAGACAGACAGGAGAAGCAACCAGCCGAAGCTCGTTCCTCGTA GACAGTTCGAAAGTCGTCTCGGCCCATCACCCATCCCGTCTCGCCAGCAGCCGACCATGG CCGCGCCGCCGCCGCCGCCGGAGCAGAAGATGATGGTGGCGATCGACGAGAGCGAGTGCA GCCACTACGCGCTGGAGTGGGCCCTGCGCAACCTCGCGCCCCGCCGCCTCGTCCTCTTCA CCGTCCAGCCCTTCTCCCCCCTCAGCTACCTCCCCGCCGGCTCCCCGCGAGCAGTTGGCC CGTCGGTGGCGTCGCCGGAGCTCATCAGGTCCGTGACCGAGCACCAGCGGCAGCTCGCCC AGGCGCTCGTCGACAAGGCCAAGGCCATCTGCGCCGACCACGGGGTTGATGCAGAGACCG TCATCGAGGTGGGTGATCCCAAGGAAACCATATGTGAAGCTGCAGACAAGTTGAATGTTG ATCTGCTCATCCTGGGCAGCCACAGCCGTGGACCTATTCAGAGGTTCTTCCTTGGCAGTG TGAGCAACTACTGTAGCCACCATGCAAAGTGCCCGGTTCT
Homology of Contig U35_1218 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | LOC_Os01g32780.1 | 168 | 8e-59 | protein|universal stress protein domain containing protein, putative, expressed |
| Brachypodium v1_2 | Bradi5g24660.1 | 160 | 1e-84 | |
| Arabidopsis v10 | None |