barSeed - Barley Seed Development Database

Probe CUST_7770_PI390587928

Source Contig U35_1221

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_7770_PI390587928	Hv_44K_v2	CAAGAAGCAAACTGAGTGGTTGGTTATTGGAATTGAAGTTAAAGATTCTTGGGATTGTCA	807	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_69539.3	1146	2e-24	932 - 991	100	60 / 60	plus	ABC02390 ABC38734
MLOC	MLOC_69539.2	2251	2e-24	2016 - 2075	100	60 / 60	plus	ABC02390 ABC38734
MLOC	MLOC_69539.5	726	2e-24	512 - 571	100	60 / 60	plus	ABC02390 ABC38734
MLOC	MLOC_69539.4	952	2e-24	787 - 846	100	60 / 60	plus	ABC02390 ABC38734
JLOC1	JLOC1_46079.2	1068	8e-25	851 - 910	100	60 / 60	plus
JLOC1	JLOC1_46079.1	1062	8e-25	845 - 904	100	60 / 60	plus
Harvest21	ABC02390	883	3e-25	808 - 867	100	60 / 60	plus	ABC02390
Harvest35	U35_1221	883	3e-25	808 - 867	100	60 / 60	plus

Contig Sequence (883 bp)

>U35_1221 883 Hv_44K_v2
GGTCGCCTTCAGCCCACGCGACGCGCCGACGGCGTGGACGTTTCTACTACTTCAGAGTTC
AGACAGAAGACAGACAGGAGAAGCAACCAGCCGAAGCTCGTTCCTCGTAGACAGTTCGAA
AGTCGTCTCGGCCCATCACCCATCCCGTCTCGCCAGCAGCCGACCATGGCCGCGCCGCCG
CCGCCGCCGGAGCAGAAGATGATGGTGGCGATCGACGAGAGCGAGTGCAGCCACTACGCG
CTGGAGTGGGCCCTGCGCAACCTCGCGCCCCGCCGCCTCGTCCTCTTCACCGTCCAGCCC
TTCTCCCCCCTCAGCTACCTCCCCGCCGGCTCCCCGCTTGGCCCGTCGGTGGCGTCGCCG
GAGCTCATCAGGTCCGTGACCGAGCACCAGCGGCAGCTCGCCCAGGCGCTCGTCGACAAG
GCCAAGGCCATCTGCGCCGACCACGGGGTTGATGCAGAGACCGTCATCGAGGTGGGTGAT
CCCAAGGAAACCATATGTGAAGCTGCAGACAAGTTGAATGTTGATCTGCTCATCCTGGGC
AGCCACAGCCGTGGACCTATTCAGAGGTTCTTCCTTGGCAGTGTGAGCAACTACTGTAGC
CACCATGCAAAGTGCCCGGTTCTTGTTGTGAAGAAGAAAGAATGAAACCCAACCATCTAC
TGTACTCATGCACATTGTGTGAAGAACCCTTGAGATGTGTATCTACATGTTTGTTGTTTG
TCATAGCATCTAGTTGCATATGAATAAAGATACTGTGCCAATTCGAAAACCACTATGTAT
TCAGTGTTGTAGATGAACGAATAATGCCAAGAAGCAAACTGAGTGGTTGGTTATTGGAAT
TGAAGTTAAAGATTCTTGGGATTGTCAAAAAAAAAAAAAAAAA

Homology of Contig U35_1221 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os01g32780.1	168	4e-64	protein\|universal stress protein domain containing protein, putative, expressed
Brachypodium v1_2	Bradi5g24660.1	160	1e-89
Arabidopsis v10	None