barSeed - Barley Seed Development Database

Probe CUST_7769_PI390587928

Source Contig U35_1222

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_7769_PI390587928	Hv_44K_v2	TTATTTCTGGAATGCAGTGCAAAGACCAAAGTGAATGTGGAGCAGTGCTTTGAGGAGCTC	651	GeneList: darkturquoise MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.525	0.852	1.189	1.421	0.804	1.103
Raw	216.835	563.533	674.181	1291.982	252.429	373.413

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK252248.1	1168	2e-24	676 - 735	100	60 / 60	plus	ABC02377 ABC02393
MLOC	MLOC_67355.1	1198	2e-24	330 - 389	100	60 / 60	minus	ABC02377 ABC02393
JLOC1	JLOC1_44468.1	1559	8e-25	810 - 869	100	60 / 60	plus
Harvest21	ABC02393	1257	3e-25	652 - 711	100	60 / 60	plus	ABC02393
Harvest21	ABC02377	1074	3e-25	647 - 706	100	60 / 60	plus	ABC02377
Harvest35	U35_1222	718	3e-25	652 - 711	100	60 / 60	plus
Harvest35	U35_1217	1345	3e-25	647 - 706	100	60 / 60	plus

Contig Sequence (718 bp)

>U35_1222 718 Hv_44K_v2
AGGCCTCTTTTCCCCTTCCTCTTTTCCCCTTCTCCTCTCCTCAAAGCAAAGCAAACCCTC
CCCACGACGAGCTGAGAAGAGAAGCAGATCTGCGATCCGATCCGATCCGGCCGGCGATCC
CTTCTCCTCGCGGCGGTGCGGACGGGATCCATCCATCTGTCTGTGGAGCGATCAGCCATG
GATTCGTCGACGGCGTCGTCCTCTCATCCGCAGCTGCAGCCGGACTTCGACTACCTGTTC
AAGCTCCTCCTCATCGGCGACTCCGGCGTCGGCAAGAGCAGTCTCCTCCTCCGATTCACA
GCAGACTCCTTCGAGGACCTATCACCAACCATCGGCGTCGACTTCAAGGTCAAGATGGTT
AACATTGCCGGCAAGAAGCTCAAGCTCGCCGTCTGGGACACTGCTGGACAGGAAAGGTTT
AGGACCTTGACCAGCTCTTACTACAGAGGGGCACAAGGGATCATTATGGTGTACGATGTT
ACTCGCCGAGACACGTTCACAAATCTGTCTGACATATGGGCCAAGGAAATTGACCTGTAT
TCGACCAACCAGGACTGCATAAAGATGCTTGTAGGAAACAAAGTGGACAAGGAAAGCGAG
AGGGCTGTCACGAAGAAGGAAGGCATTGATTTTGCGAGGGAGTACGGGTGTTTATTTCTG
GAATGCAGTGCAAAGACCAAAGTGAATGTGGAGCAGTGCTTTGAGGAGCTCGTGCTGA

Homology of Contig U35_1222 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os10g31830.1	223	1e-78	protein\|ras-related protein, putative, expressed
Brachypodium v1_2	Bradi5g27670.1	216	7e-115
Arabidopsis v10	AT1G43890.1	212	6e-107	\| Symbols: ATRAB18, ATRABC1, RAB18-1, RABC1, ATRAB-C1, RAB18 \| RAB GTPASE HOMOLOG B18 \| chr1:16646934-16648395 FORWARD LENGTH=212