barSeed - Barley Seed Development Database

Probe CUST_7768_PI390587928

Source Contig U35_1223

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_7768_PI390587928	Hv_44K_v2	GTCTCTGCTTGTGCTGAACACATTACGATAATACTATTGCACTGAAATAAAAATGCGATA	970	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_34425.1	1272	2e-24	5 - 64	100	60 / 60	minus	ABC03570 ABC03573 ABC49677
JLOC1	JLOC1_22195.2	1361	8e-25	1177 - 1236	100	60 / 60	plus
JLOC1	JLOC1_22195.1	1152	8e-25	968 - 1027	100	60 / 60	plus
Harvest21	ABC03570	1057	3e-25	28 - 87	100	60 / 60	minus	ABC03570
Harvest35	U35_1223	1058	3e-25	971 - 1030	100	60 / 60	plus

Contig Sequence (1058 bp)

>U35_1223 1058 Hv_44K_v2
GCTGCCGTCGCCTGGCCCTCCTCCTCCTCCTCAGCTCAGTCGGCTGGTCTCGTATCCCTC
CCAGCCCCAGTCCCCAGGCACCAGGGGCCTCAGCAGGATGGCTACCCCGCAGTGCTGCGC
GGACCCGCCGACGCTCAACCCCGCCGGCGGCGAGGGCAAGGTCGTGGACAGCTTCGGCGG
GATCACGGCGTACGTCTCCGGCGCCCGAGAGTCCAAGGCCGCCGTCGTCCTCATCTCCGA
CGTCTTCGGGTTTGAAGCGCCGAATCTGAGGAAGATAGCCGATAAAGTCGCTTCGTCTGG
ATATTTAGTTGTGGTGCCAGATTTCTTACATGGGGATCCATATGTACCTGAAAACGCCGA
CAGACCAATACAAGTGTGGTTAAAGGAGCATGCCCCGGGAAAAGCATTTGAAGAGGCAAA
ACCTGTTATTGCTGCTCTCAAAGAACAAGGAGTATCTACTGTTGGGGCTGCAGGTTATTG
CTGGGGTGCAAAGGTGGTTGCTGAGCTAGCGAAAGCTAATGAGATCCATGCAGCTGTTAT
GTCACACCCTTCTTTTGTTACTGTTGAAGATATCAAAGAGGTGAAATGCCCCATAGCTGT
ACTTGGAGCTGAAATTGACAAAACATCCCCACCAGAATTGGTCAAGCAGTTCGAGCAGGT
TCTGTCCTCTAACTCAGGGATTGCTCACTTTGTCAAGATATTCCCTGGGGTTTCTCATGG
ATGGACTGTGAGATACAAAAGTGAAGACGCAGGTGCTGTGAAGAGTGCTGAGGAAGCCCT
GTCACATATGATCGACTGGTTTAGCAAGAACCTACAGTGAATCTGAATTAGCGGTCCTTT
GTCCTTAATACGCCAGTGTCACTCTTCACCAGTCATCATGTAATCATCCAGGGTTTATGT
TATAGGGCCTGCATCTTTGGTTGTACAGATCTGTCCTGTGCTAGCATGCATTGTGTGATT
ACTCATATCGGTCTCTGCTTGTGCTGAACACATTACGATAATACTATTGCACTGAAATAA
AAATGCGATATTTGTTGTTTCAAAAAAAAAAAAAAAAA

Homology of Contig U35_1223 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os05g33100.1	241	2e-145	protein\|endo-1,3;1,4-beta-D-glucanase precursor, putative, expressed
Brachypodium v1_2	Bradi2g26040.1	241	4e-148
Arabidopsis v10	AT3G23600.1	239	8e-102	alpha/beta-Hydrolases superfamily protein \| chr3:8473833-8475655 FORWARD LENGTH=239