barSeed - Barley Seed Development Database

Probe CUST_7766_PI390587928

Source Contig U35_1225

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_7766_PI390587928	Hv_44K_v2	TTTATGTTATGGTGTTTGCTCTAGCCGATGCCTATAGGACATGCGTCTTTGTCTGTCGCA	684	GeneList: darkred MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.097	1.482	1.856	1.407	0.539	0.588
Raw	5709.307	12126.440	13159.567	15769.757	2123.717	2521.827

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_4339.1	1167	2e-24	1072 - 1131	100	60 / 60	plus	ABC03570 ABC03573 ABC43854
JLOC1	JLOC1_2683.1	1335	8e-25	1050 - 1109	100	60 / 60	plus
Harvest21	ABC03571	750	3e-25	117 - 176	100	60 / 60	minus
Harvest35	U35_1225	862	3e-25	685 - 744	100	60 / 60	plus

Contig Sequence (862 bp)

>U35_1225 862 Hv_44K_v2
GCCGCCGTACTTCTCATCTCCGTACGTTTTCGGGTTTGAAGCGCCGAATCTGAGGAAGAT
AGCCGATAAAGTTGCTTCGTCTGGATATTTCGTTGTGGTGCCAGATTTCTTGCATGGGGA
TCCATATGTACCTGAAGACGCTGACAGACCAATAGCAGTGTGGATCAAGGAGCATACCGC
GGGAAAAGCATTTGAAGAGGCAAAGCCTGTTATCGCTGCTCTAAAGGAACAAGGAGCGTC
TAGTGTTGGGGCTGCAGGTTATTGTTGGGGTGCAAAGGTAGTCGCAGAGTTAGCGAAAGC
TAATGAGATCCAGACAGCCGTTATGTCGCATCCTTCTTTTGTTACTGTCGATGATATAAA
AGAGGTGAAATGCCCCATCGCTGTACTTGGAGCTGAAACTGATGTGATGTCCCCACCAGA
ATTGGTCAAGGAGTTCGAGCAGGTTCTATCATCTAACTCAGGGATTGCTCACTTTGTCAA
GATCTTCCCTGGGGTTTCTCATGGATGGACCGTGAGATATAATGGCGAAGATGCGGCTGC
TGTAAAGAGCGCCGAGGAGGCCCTGACAGACATGATTGACTGGTTTAACAAGAACCTCAA
GTGAACCTGAATTAGCGGCCCTCCTTTTGTAATAACTAATAAGCCTGTGTCATTCTTCAC
GAGTCATCACGCGAGCATCCGGGGTTTATGTTATGGTGTTTGCTCTAGCCGATGCCTATA
GGACATGCGTCTTTGTCTGTCGCAGGCGTGCTGGTTGGTGTGTGATTGCTCATTCCGGGG
TCTGCTTGTGCTGAACACTGAACTATTGTGCTAAATAAAATGTGGTGCCTGCAGTTTTAG
AAAAAAAAAAAAAAAAAAAAAA

Homology of Contig U35_1225 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os05g33100.1	241	5e-113	protein\|endo-1,3;1,4-beta-D-glucanase precursor, putative, expressed
Brachypodium v1_2	Bradi2g26040.1	241	1e-117
Arabidopsis v10	AT3G23570.1	239	2e-81	alpha/beta-Hydrolases superfamily protein \| chr3:8458052-8459608 REVERSE LENGTH=239