barSeed - Barley Seed Development Database

Probe CUST_7765_PI390587928

Source Contig U35_1226

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_7765_PI390587928	Hv_44K_v2	AAAGTTGCTGCGTCTGGATATTTCGTTGTGGTGCCAGATTTCTTGCATGGGGATCCATAT	361	GeneList: darkorange MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.914	1.255	2.311	2.085	0.658	0.625
Raw	584.190	1189.332	2027.600	2981.558	320.410	335.319

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_4339.1	1167	2e-24	455 - 514	100	60 / 60	plus	ABC03570 ABC03573 ABC43854
JLOC1	JLOC1_2683.1	1335	8e-25	433 - 492	100	60 / 60	plus
Harvest21	ABC46058	305	3e-25	239 - 298	100	60 / 60	plus
Harvest21	ABC03573	1121	3e-25	362 - 421	100	60 / 60	plus	ABC03573
Harvest35	U35_1226	879	3e-25	362 - 421	100	60 / 60	plus
Harvest35	U35_1225	862	1e-23	68 - 127	98	59 / 60	plus

Contig Sequence (879 bp)

>U35_1226 879 Hv_44K_v2
GGAGCTTCTACCATACGCGAACAGATTCGAAACGAGCCGCCAGTCACGCGTCCGCTGTCC
TTCTCCCCCCATTTATTTCGTGTCGCTGCGGCGCTGTCGCTCGGTCCGCTTCCCAATCCC
AATCTCATCGCCAGGCAATCACTCTCGCCCCTCCCCACCAGCGCGCGCGACGGACATGGC
TAGCCCGCAGTGCTGCGCGAACCCACCGACGCTCAACCCCGCCGCCGGCGAGGGCAAGGT
CGTCGACAGCTTCGGCGGGATCAAGGCGTACGTCGCCGGCGCCCAAGAGTCCAAGGCCGC
CGTAGTTCTCATCTCCGACGTCTTCGGGTTTGGAGCGCCGAATCTGAGGAAGATAGCCGA
TAAAGTTGCTGCGTCTGGATATTTCGTTGTGGTGCCAGATTTCTTGCATGGGGATCCATA
TGTACCTGAAGACGCTGACAGACCAATAGCAGTGTGGATCAAGGAGCATACCGCGGGAAA
AGCATTTGAAGAGGCAAAGCCTGTTATCGCTGCTCTAAAGGAACAAGGAGCGTCTAGTGT
TGGGGCTGCAGGTTATTGTTGGGGTGCAAAGGTAGTCGCAGAGTTAGCGAAAGCTAATGA
GATCCAGACAGCCGTTATGTCGCATCCTTCTTTTGTTACTGTCGATGATATAAAAGAGGT
GAAATGCCCCATCGCTGTACTTGGAGCTGAAACTGATGTGATGTCCCCACCAGAATTGGT
CAAGGAGTTCGAGCAGGTTCTATCATCTAACTCAGGGATTGCTCACTTTGTCAAGATCTT
CCCTGGGGTTTCTCATGGATGGACCGTGAGATATAATGGCGAAGATGCGGCTGCTGTAAA
GAGCGCCGAGGAGGCCCTGACAGACATGATTGACTGGTT

Homology of Contig U35_1226 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os05g33100.1	241	1e-141	protein\|endo-1,3;1,4-beta-D-glucanase precursor, putative, expressed
Brachypodium v1_2	Bradi2g26040.1	241	6e-149
Arabidopsis v10	AT3G23600.1	239	1e-102	alpha/beta-Hydrolases superfamily protein \| chr3:8473833-8475655 FORWARD LENGTH=239