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Probe Details

Probe IDChipProbe Sequence (60 bp)Probe locationDifferentially Expressed
CUST_7761_PI390587928Hv_44K_v2ATGATTTGGTTGAACTAGGGTTCTTCGCTTTGAGTTACGTTGATCTTGTGGTTCTCTAAA2278GeneList: blue
MasterList: None



Probe Values

3 dpa4 dpa5 dpa6 dpa7 dpa8 dpa
Normalized 1.4431.3641.1530.7870.2910.319
Raw 41658.66760797.33346112.93349051.5676354.7777641.120



Probe Sequence's BLAST hits in Barley Unigene Datasets

DatasetHitHit LengthE-valuePosition on Hit% IdentityMatchDirectionProbes on Sequence
MLOCMLOC_50972.128313e-2194 - 1509856 / 57minus ABC03536 ABC31629 ABC37641
JLOC1JLOC1_32523.126012e-212391 - 24479856 / 57plus
Harvest21ABC035366751e-2368 - 12410057 / 57minusABC03536
Harvest21ABC0353723366e-222280 - 233310054 / 54plus
Harvest35U35_123024013e-252279 - 233810060 / 60plus



Contig Sequence (2401 bp)

>U35_1230 2401 Hv_44K_v2
CCCATCCCCAACCCTAGCCGCCAGGAGCTGAGGAACTAGGAGGCAGTCCGGGATGCGGCG
ATCGGCGATGGCGCTCCGCTCCACGGCGGACCGGTGCTTCGGTCACCACTCACCGTTGAC
GAATGTTATTCAATCAACTTTCAATGCAAACATTAGTTCAAGATGGGGAAGTCTTGCAAG
AGCTTTCAGTGCAAAACCACTTGGAAATGAGGTTATTGGGATTGATTTGGGAACAACGAA
TTCATGTGTTTCTGTTATGGAGGGAAAGAATGCAAAAGTGATAGAGAATTCAGAAGGCAC
TAGGACGACACCATCAGTTGTTGCCTTCAGTCAGAAGGGAGAGCGGCTTGTTGGAACTCC
AGCTAAACGTCAAGCAATTACCAATCCACAGAACACCTTCTTTGGTACAAAGCGTATGAT
AGGGCGGCGCTTTGATGACCCACAGACGCAGAAAGAGATGAAAATGGTACCATATAAAAT
TGTCAAGGCTCCAAATGGTGATGCTTGGGTTGAAACAACAGATGGCAAGCAGTACTCACC
GAGTCAGATTGGTGCATTTGTATTAACCAAGATGAAGGAGACTGCTGAATCTTACCTTGG
TAAGACTATTTCGAAGGCTGTGATCACAGTTCCAGCATACTTCAATGATGCCCAGCGGCA
GGCAACCAAGGACGCTGGTCGAATTGCTGGACTTGATGTCCAAAGGATTATCAATGAACC
TACTGCTGCTGCTCTGTCTTATGGAACAAACAACAAGGAGGGTTTGATAGCTGTATTTGA
CCTTGGAGGTGGTACTTTTGATGTCTCCATCCTTGAGATCTCCAATGGAGTTTTTGAGGT
GAAAGCAACAAATGGTGATACTTTTCTGGGTGGAGAAGACTTTGATAATACTCTATTGGA
GTACCTAGTCAGTGAATACAAAAGATCTGATAATATTGATCTGTCCAAAGACAGACTAGC
TCTGCAAAGGTTGCGTGAAGCAGCTGAGAAGGCAAAAATTGAACTCTCATCAACTGCACA
GACTGAGATTAACCTTCCTTTTATCACGGCTGATGCTGCTGGAGCAAAACATTTGAATAT
AACATTGACAAGATCAAAGTTTGAAAGTTTGGTGAGTGGTCTCATTGCAAGGACTAGAGA
CCCATGCAAGAATTGTTTGAAGGATGCTGGCATAACCACAAAGGAAGTTGATGAGGTTCT
TCTTGTTGGTGGCATGACAAGGGTTCCCAAAGTGCAGGAAGTGGTTTCAGAAATCTTCGG
CAAGGCCCCTAGCAAAGGAGTCAACCCAGATGAAGCTGTTGCCATGGGTGCTGCTCTTCA
GGGTGGCATTCTCCGTGGAGATGTCAAGGAGCTTCTTCTCCTTGACGTAACCCCTCTTTC
ACTTGGTATTGAGACTCTTGGTGGTATCTTTACCAGACTGATAACCAGGAACACTACCAT
CCCCACAAAGAAAAGCCAGGTGTTCTCAACTGCTGCTGACAACCAGACGCAAGTGGGTAT
CCGTGTCCTGCAAGGTGAGCGTGAGATGGCGACAGACAACAAACTTCTTGGCGAGTTTGA
TCTTGTCGGCATCCCACCAGCGCCAAGAGGACTGCCACAGATTGAGGTCACATTTGATAT
CGATGCCAATGGAATCGTGACGGTCTCTGCAAAGGACAAGGCCACCGCAAAGGAGCAGCA
GATCACCATCCGATCATCCGGTGGGCTTTCTGAGTCTGAGATCGAGAAGATGGTGCACGA
GGCTGAGTTGCACTCGCAGAAGGACCAGGAGCGCAAGGCCCTCATTGACATCAGAAACAC
CGCAGACACCACCATTTACAGCATCGAGAAGAGCCTGGGAGAGTACAGGGACAAGATCCC
TGCGGAGGTTGCCACCGAGATCGAGACGGCGGTTGCTGATCTCCGTGCGGAGATGGCCTC
TGACGACATCGAGAAGATAAAGAGCAAGATGGAAGCGGCCAACAAGGCGGTCTCAAAGAT
CGGGCAACACATGTCTGGTGGTGGTGCTGCCGGAGGCGGCGCGGCTGGTGGTTCCCAGGA
AGGAGGTTCGCAGGAAGGAGGGTCGCAGGGTGGAGGTGACCAGGCCCCAGAGGCCGAGTA
TGAGGAGGTGAAGAAGTGAAGAAGCTGCCCCAGCCCAGCCCCACCTTCTTCTAAATACAG
TTATTAGCTAGTTTTGAGGAACACTAGGGATCTTGTTGGCTGTAATAAAATTTTGCTCCA
CTGAGGCATGTGAAACATGCTAAATGCTCTTAGCGCGCGCACGGTACTGCCGTATTGTAT
GATTTGGTTGAACTAGGGTTCTTCGCTTTGAGTTACGTTGATCTTGTGGTTCTCTAAAAA
AAAAAAAAAAAAGGTATTATTTGCTGGTGCTCATCGGTTGGATCAAAAAAAAAAAAAAAA
A



Homology of Contig U35_1230 to Model Species (E-value threshold 1e-50)

Pseudo-peptide datasetHitHit lengthE-valueDescription
Rice v7LOC_Os02g53420.16800.0protein|DnaK family protein, putative, expressed
Brachypodium v1_2Bradi3g57450.16820.0
Arabidopsis v10AT5G09590.16820.0| Symbols: MTHSC70-2, HSC70-5 | mitochondrial HSO70 2 | chr5:2975721-2978508 FORWARD LENGTH=682