barSeed - Barley Seed Development Database

Probe CUST_7760_PI390587928

Source Contig U35_1231

barSeed

Links

Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_7760_PI390587928	Hv_44K_v2	ATTACTTGGTTGAACTAGGGTTCTTCGCTTTGAGTTACGTTGATCTTGTGGTTCAAAAAA	275	GeneList: blue MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.427	1.313	1.144	0.800	0.300	0.324
Raw	37177.233	51976.367	40713.233	44220.833	5940.797	6949.920

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction
Harvest21	ABC03539	346	3e-25	276 - 335	100	60 / 60	plus
Harvest21	ABC50106	343	2e-21	9 - 61	100	53 / 53	minus
Harvest35	U35_1231	346	3e-25	276 - 335	100	60 / 60	plus

Contig Sequence (346 bp)

>U35_1231 346 Hv_44K_v2
GCACGAGGAGGCTGAGTTGCACTCGCAGAAGGACCAGGAAGGAGGTTCGCAGGAAGGAGG
GTCGCAGGGTGGCGGTGACCAGGCCCCAGAGGCCGAGTACGAGGAGGTGAAGAAGTGAAG
AAGCTGCCCCAGCCCAGCCCCACCTTCTTCTAAATACAGTTATTAGCTAGTTTTGAGGAA
CACTAGGGATCTTGTTGGCTGTAATAAAATTTTGCTCCACTGAGGCATGTGAAACATCCT
AAATGCTCTTAGCGCGCACGGTACTGCCGTATTGTATTACTTGGTTGAACTAGGGTTCTT
CGCTTTGAGTTACGTTGATCTTGTGGTTCAAAAAAAAAAAAAAAAA

Homology of Contig U35_1231 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None