barSeed - Barley Seed Development Database

Probe CUST_7758_PI390587928

Source Contig U35_1233

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_7758_PI390587928	Hv_44K_v2	GGTGCTAGAAAATCGAAATCTAGGTTGGGTCTGTGAAATAAAAAGTTGGCATGTGATCCT	1221	GeneList: plum1 MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.117	0.202	0.579	1.856	1.877	2.565
Raw	86.023	226.465	563.955	2706.997	1031.123	1499.450

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
JLOC1	JLOC1_49943.2	1468	8e-25	1325 - 1384	100	60 / 60	plus
Harvest21	ABC03343	1306	3e-25	1222 - 1281	100	60 / 60	plus	ABC03343
Harvest21	ABC44989	348	2e-22	11 - 68	98	57 / 58	minus
Harvest35	U35_1233	1306	3e-25	1222 - 1281	100	60 / 60	plus

Contig Sequence (1306 bp)

>U35_1233 1306 Hv_44K_v2
GCATCGCTTCCCGGGCCGGCTGCGTAGCCAATACACTACGTGCGTACACGGGAGCCACCG
GCACCGCCCTTGCCCCGTATAACAAGAGCACAACGCTTGCGAATCTACTCACCCACACCG
GTGATCCCGGCCTCCGTAACGTACAGACACAGCGACCGGGCGTCATGGCGGGGGAGGATG
CCACTAGGGCGGCGACGGAAGAAGAGCTGTCGTCGGTGGCGGAGGCGGCGCCGGTGACGG
CCCAGCGGCCGGTCCGGTCGGACCTGGAGAAGTACATCCCAAAGCCATACCTGGCTCGAG
CTCTGGTGGCGCCGGACGTGTACCATCCTCAAGGGAGCAAGGAGCGCGGGCACGAGCACC
GCCACAGGAGCGTGCTGCAGCAGCACGTAGCCTTCTTCGACATGGATGGCGACGGCGTCA
TCTACCCATGGGAAACTTACCAAGGACTGAGGGCGCTGGGCTTCAACATGATCGTGTCCT
TCGTCATCGTCATAATCATACATGCTACTCTCAGCTACACAACTCTGCCTAGCTGGGTAC
CGTCTCTCCTCTTCCCATTCTACATCGACAACATCCACAGGGCCAAGCATGGCAGCGACA
CCGCGACTTACGACACCGAGGGAAGGTACATGCCGGTGAATTTTGAGAACATATTCAGCA
AGAACGCCCGCTCGTCACCGGACAAGCTCACATTCCGGGAGATTTGGACGATGACCGACG
ACCAGCGGCAGGCGAACGACCCATTTGGATGGGTGGCGAGCAAGGCGGAGTGGATACTGC
TGTACATGCTCGCCAAGGACGAGGAGGGGAACCTTCCCAGAGAGGCTATCCGCCGCTGCT
TCGACGGTAGCCTGTTCGAGTTCATCGCCGACGAGAGGAGGCAGGCGCACGGGAAGCAGT
ACTAGCCTGCGTGCAACGCTGTCGGCCCGGCCGGAATGCATGTCTTCGTGTCTAAAACTG
TGGACTGGCTACCATCTCATGTATGCCTAATGCAATAAGTTGTGCCCTCCTCAAAGTTTC
ATCAGAACAAGAAACATCGTCGTTTTCAATAATAATTTTGTTTTTTCTCTAAAAAAAAAA
AAAAAAAAATGAACCCCTCATGTTCGGTGACACCGGCGTGGCGCCTTCTGGATATTCACC
ATATCGTTGTAGTGAAAAACAACATAAGATAGAGGTTAGGTATTCGCCGATGGTCGGGAC
TTGGAGCATGGCCAATGTGTTGGTGCTAGAAAATCGAAATCTAGGTTGGGTCTGTGAAAT
AAAAAGTTGGCATGTGATCCTTGCTTTTAAAAAAAAAAAAAAAAAA

Homology of Contig U35_1233 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os04g43200.1	245	9e-122	protein\|caleosin related protein, putative, expressed
Brachypodium v1_2	Bradi5g15427.1	233	1e-124
Arabidopsis v10	AT2G33380.1	236	3e-101	\| Symbols: RD20, CLO-3 \| Caleosin-related family protein \| chr2:14144984-14146374 REVERSE LENGTH=236