barSeed - Barley Seed Development Database

Probe CUST_7736_PI390587928

Source Contig U35_1410

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_7736_PI390587928	Hv_44K_v2	GAGGAAAAACCAGCCAGACGATTAGCAAACTAGCAGGAACAAAATCTCAGGTCCTTTTTG	88	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_750.1	894	2e-24	207 - 266	100	60 / 60	minus	ABC02236
MLOC	MLOC_25229.1	170	3e-21	16 - 72	98	56 / 57	plus	ABC02236
JLOC1	JLOC1_452.1	946	8e-25	126 - 185	100	60 / 60	minus
Harvest21	ABC02234	365	3e-25	89 - 148	100	60 / 60	minus
Harvest35	U35_1410	1197	3e-25	89 - 148	100	60 / 60	minus

Contig Sequence (1197 bp)

>U35_1410 1197 Hv_44K_v2
AGGCTCCTCCTCCCTTCAGATCGCAGCCGCTACCTCCTATCCACCGTCCCACCCATCCTC
CGCTCGTCTGTCGTCCGTTGTCGGCTCCCAAAAAGGACCTGAGATTTTGTTCCTGCTAGT
TTGCTAATCGTCTGGCTGGTTTTTCCTCTGTGCGTGTGTGTGCAGGAGCGTACACGGCAT
GTGGGGGCGGCGCGGCCTACGTGTGGGTGGCGGCGACGTGCAGCGTCGGCTCCCTCTTCT
ACGTCCTCGCCAAGGCCGTCGCGGTCTTCGGCGTCGCCGCCGACGGCGCCGCTGGGCTCG
ACCTGCACGGCAAGGGCCAGGCCCTCGCCGTCGAGGCCATGTTCCTCATGTCGCTCGCGC
TCGCCGCCGCGCACCTCGCCATGGCGTACCGGGCGAGCAGCCGCGAGAAGCGCCGCCTCC
ACGTCGTCTACAGGATCGACATCGAAGCGGTGAGGCTAAAGGGAACCCACACGCCCAAGT
CGCTGAAGCAATGCATTGTATGACACCCGATCCATCCTCTACACGGATGGAAACGGGCTC
CGAAGAGGCGGCGCGACTCTCTCTCTCTCTCTCTCTGCTTCCTCCTCAGGTCCCAAATTT
TGGCTCGAGCAGTAGTAGTAGCTTGTGTACACTCGGACACCACACGCCATGTGTATATGT
TCACCCGCACCGACGTCTCTCCCTCCCTCCCAAGTGGACATAGTGTGGAGCTCAGCTGTA
AATATGGTGGAACATTTGTGCTTCGGCCTCCTGCAACATAGGATGAGCCGCGCGGCAGAT
GCGATTGCTGTTTTGTCATCTACTCTTCTTCACTTCTTCAGCGGCCGCTGCCGGATCAAT
AACAGAGATGCTTCGTGTTTAGCACCACCCTTTTTTACAGAAAACATGGAAAACATACAT
ACAGGTGCGTCGAGAGCAAACCTGCGGCGCCACAATATTACAAGCAGACAATAATTCACA
GAGATCCGAATAATTCACAAATTGTTAAATGTCAGTCTTCAGTGCGACGATGTCGTTCCC
TCCCCTTCCATCGGAGATTCCACGCGTAGGCTGTTCTCGCGATGGTAGAGAGATTTTGCG
CCTTGGAATATCGTTCCAAGTTTTTTCAATGCTTTTCCTCGCAACTTCAGAACATCTTTT
GAGACAGTGCTATCTTTAAGAACTGCTTGGCATACTCGGGAAAGAGTTGACTCGATA

Homology of Contig U35_1410 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None