barSeed - Barley Seed Development Database

Probe CUST_7735_PI390587928

Source Contig U35_1411

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_7735_PI390587928	Hv_44K_v2	TAAAAGGGTTGCAAACAGAAAGAGAGCAAAAGCTTACTCAGAGCCTAAAGGATCGACTTC	808	GeneList: purple MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.453	0.731	1.310	1.548	1.091	1.360
Raw	54.155	134.674	214.132	408.768	97.702	135.385

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK372514	2582	2e-24	833 - 892	100	60 / 60	plus	ABC05126
MLOC	MLOC_11569.1	1598	2e-24	873 - 932	100	60 / 60	plus	ABC05126
JLOC1	JLOC1_7672.1	2054	8e-25	752 - 811	100	60 / 60	plus
Harvest21	ABC28233	669	3e-25	609 - 668	100	60 / 60	plus
Harvest21	ABC05126	1617	3e-25	738 - 797	100	60 / 60	plus	ABC05126
Harvest35	U35_1412	1600	3e-25	738 - 797	100	60 / 60	plus
Harvest35	U35_1411	869	3e-25	809 - 868	100	60 / 60	plus

Contig Sequence (869 bp)

>U35_1411 869 Hv_44K_v2
ATCAGCATCTCTCTCATCGTCCGCCGCGGACACGCCAGCCTGCCTGCCAGCGCACCACAC
CTGGGCGCCTCGCTGCCGTGACGTGGTGTCGCTGACGGGTGGGCCCTCTGCCCACGTTGA
CCCCACCGCATCACCAATTCACCACCACCCGACTCTCCGTCCCAGCAGAGATATTCGCGG
ATCCACGGTGTCGAGAAACACCCCCCAAATCTCTTCTTCCTCCTCGTCTTCTTCCCCGGG
AACCTTCGAGAAGCTTCTAGAACCGACCGTCCGGCCGGCCGTGCATTCGCTGTTCTGTTG
GTAGCCGCGGGCGGGCGAGATCCGGTTGCGGCGGCCATGGTGAAGGAGACCGCCTACTAC
GAAACCCTGGGTGTCAGCGTCGACGCCTCCCCCTCCGACATCAAGAAGGCATACTACGTC
CAGGTGAGTTCCCATCGTCTTATATCATCAATACTAGGCCCATCTCCCTCTGCTGAATCT
GAATCGGCGCGTTTGTATGCCTTCCAGGCCAGGCTGGTGCACCCGGACAAGAATCCCGGC
AACCCCGACGCGGCGCGGAAATTCCAGGATCTTGGAGAGGCCTACCAAGTCCTAAGCGAT
CCAGCCAAGAAGGAGGCTTATGATAAGCATGGAAAGGAGGGCCTTTCCCAGGAAAACATG
GTCGATCCCGCTGCTGTCTTTGGGATGCTTTTTGGAAGCGACTATTTTGAAGACTATGTT
GGTCAGCTTGCTCTGGCATCCATAGCTTCAGTGGAGGTTGATGAAGGTTTAAGCAGTCAA
GACGCCAGAGCAAAGGTTCAAGAGAAAATAAAAGGGTTGCAAACAGAAAGAGAGCAAAAG
CTTACTCAGAGCCTAAAGGATCGACTTCA

Homology of Contig U35_1411 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os05g46620.1	339	8e-78	protein\|chaperone protein dnaJ 10, putative, expressed
Brachypodium v1_2	Bradi2g17970.1	550	2e-79
Arabidopsis v10	None