barSeed - Barley Seed Development Database

Probe CUST_7732_PI390587928

Source Contig U35_1414

barSeed

Links

Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_7732_PI390587928	Hv_44K_v2	CAGCAGCTATTTATCTTGTGTGTATTTAATAAGCACGCAGACATTTGTTGTGCACTAATA	1500	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK361557	1597	2e-24	1512 - 1571	100	60 / 60	plus	ABC49759
MLOC	MLOC_45165.1	1186	2e-24	25 - 84	100	60 / 60	minus	ABC49759
JLOC1	JLOC1_29315.2	1289	8e-25	1124 - 1183	100	60 / 60	plus
JLOC1	JLOC1_29315.1	1508	8e-25	1343 - 1402	100	60 / 60	plus
Harvest21	ABC52615	354	3e-25	284 - 343	100	60 / 60	plus
Harvest21	ABC03889	1216	3e-25	21 - 80	100	60 / 60	minus
Harvest21	ABC03888	1597	3e-25	1499 - 1558	100	60 / 60	plus
Harvest35	U35_50467	354	3e-25	284 - 343	100	60 / 60	plus
Harvest35	U35_1415	1216	3e-25	1137 - 1196	100	60 / 60	plus
Harvest35	U35_1414	1601	3e-25	1501 - 1560	100	60 / 60	plus

Contig Sequence (1601 bp)

>U35_1414 1601 Hv_44K_v2
GTTGGCGCTCTAAATAATCTCCTCCACTGACTCCCCTCCCCTGCCTATCCACTCTGCTCC
ACCGCCATGGATTTCTCCTCCCTAGCGAGGCCGCAAGCGCTCCGCTGTGGCTCGACGGGT
GCCCTCGGCGCCCACGCCGCTCGACGCCGCTCCGCCCAGCTGCTCTGCCCGCGCCGACCC
ACATTCCGCTGCTCCGTCGAGGCAGCCAAGCAGCAGGTGCAGGGGACGCTAGCCGCGGAG
GCGGCGGCGGAGGCGGCGCGCAACGAATGCTTCGGGGTCTTCTGCACCACCTACGATCTC
GAGGCGGATGAAAAGACCAAGTCCTGGAAGAAATTAGTGAACGTTTCTGTGTCAGGTGCG
GCTGGGATGATATCGAACCATCTGCTGTTCAAACTTGCCTCCGGTGAGGTTTTTGGACAG
GACCAACCAATAGCACTTAAGTTATTGGGCTCAGAAAGATCACTACAAGCACTAGAAGGT
GTAGCTATGGAACTGGAGGATTCATTGTATCCATTGCTAAGGGAAGTCAGCATCGGGGTA
GATCCTTATGTGATCTTCGAAGATGCAGATTGGGCCCTTCTAATTGGGGCCAAACCCAGA
GGACCGGGAGTGGAGCGAGCTGCCTTACTAGATATCAATGGTCAAATCTTCGCTGAACAG
GGGAAAGCACTTAACGCTGTGGCATCTCGGAATGTGAAAGTCATAGTTGTTGGGAACCCC
TGTAACACTAATGCTTTGATCTGCTTGAAAAATGCGCCCAGCTTACCAGCAAAGAACTTT
CATGCATTGACAAGGTTGGATGAAAATAGAGCCAAGTGTCAGCTAGCATTAAAAGCTGGT
GTGTTTTATGACAAAATATCAAATATGACTATTTGGGGAAACCATTCAACAACTCAGGTT
CCTGATTTCTTGAATGCCAAAATTAATGGGAGGCCAGTAAAAGAAGTCATCGAAGATACA
AAGTGGCTAGAAGAGGATTTCACTATAACTGTTCAAAAGCGTGGAGGTGTGCTCATCCAA
AAGTGGGGCAGATCTTCAGCTGCATCAACCGCTGTTTCCATCGTCGATGCAATGAGGTCC
CTCGTAACTCCTACGCCGGAAGGAGACTGGTTCTCTACAGGGGTTTATACGACCGGAAAT
CCTTATGGCATAGTAGATGATATCGTATTCAGTATGCCGTGCAGATCAAAGGGCGATGGC
GACTATGAACTAGTTAAAGATGTGGCAATGGACGATTTTCTCTGGGGCCGGATCAAAAAG
AGTGAAGCTGAACTGATCGCTGAGAAAAGATGTGTTGCCCATCTTACAGGGGAGGGTAAT
GCATTTTGTGATCTTCCTGGGGATACAATGCTTCCTGGAGAGATGTAGTGCTACTGCTAT
GGACGATACTAGCAATCTGCCAATTGCTACCAAGATGTCATGTTATTATTAGAAGGATCA
CAGTGTTCCCAACACCAACAGGAAGAAGGATAGTTGAGAGATGCGACTGCTTGCAGGCTG
CAGCAGCTATTTATCTTGTGTGTATTTAATAAGCACGCAGACATTTGTTGTGCACTAATA
ATATATAAAGCAAAAGATTTTCATAAAAAAAAAAAAAAAAA

Homology of Contig U35_1414 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	Description
Rice v7	LOC_Os08g44810.1	434	protein\|lactate/malate dehydrogenase, putative, expressed
Brachypodium v1_2	Bradi3g12460.1	441
Arabidopsis v10	AT5G58330.1	443	lactate/malate dehydrogenase family protein \| chr5:23580010-23582287 REVERSE LENGTH=443