barSeed - Barley Seed Development Database

Probe CUST_7731_PI390587928

Source Contig U35_1415

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_7731_PI390587928	Hv_44K_v2	CAGCAGCTATTTATCTTGTGTGTATTTAATAAGCACGCAGACATTTGTTGTGCACTAATA	1136	GeneList: orangered4 MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	2.658	2.609	0.955	0.966	0.489	0.676
Raw	387.516	632.366	193.989	316.774	54.370	83.043

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK361557	1597	2e-24	1512 - 1571	100	60 / 60	plus	ABC49759
MLOC	MLOC_45165.1	1186	2e-24	25 - 84	100	60 / 60	minus	ABC49759
JLOC1	JLOC1_29315.2	1289	8e-25	1124 - 1183	100	60 / 60	plus
JLOC1	JLOC1_29315.1	1508	8e-25	1343 - 1402	100	60 / 60	plus
Harvest21	ABC52615	354	3e-25	284 - 343	100	60 / 60	plus
Harvest21	ABC03889	1216	3e-25	21 - 80	100	60 / 60	minus
Harvest21	ABC03888	1597	3e-25	1499 - 1558	100	60 / 60	plus
Harvest35	U35_50467	354	3e-25	284 - 343	100	60 / 60	plus
Harvest35	U35_1415	1216	3e-25	1137 - 1196	100	60 / 60	plus
Harvest35	U35_1414	1601	3e-25	1501 - 1560	100	60 / 60	plus

Contig Sequence (1216 bp)

>U35_1415 1216 Hv_44K_v2
CGGGGCGCAACGAATGCTTCGGGGTCTTCTGCACCACCTACGATCTCGAGGCGGATGAAA
AGACCAAGTCCTGGAAGAAATTAGTGAACGTTTCTGTGTCAGGTGCGGCTGGGATGATAT
CGAACCATCTGCTGTTCAAACTTGCCTCCGGTGAGGTTTTTGGACAGGACCAACCAATAG
CACTTAAGTTATTGGGCTCAGAAAGATCACTACAAGCACTAGAAGGTGTAGCTATGGAAC
TGGAGGATTCATTGTATCCATTGCTAAGGGAAGTCAGCATCGGGGTAGATCCTTATGTGA
TCTTCGAAGATGCAGATTGGGCCCTTCTAATTGGGGCCAAACCCAGAGGACCGGGAGTGG
AGCGAGCTGCCTTACTAGATATCAATGGTCAAATCTTCGCTGAACAGTGCTTTGATCTGC
TTGAAAAATGCGCCCAGCTTACCAGCAAAGAACTTTCATGCATTGACAAGGTTGGATGAA
AATAGAGCCAAGTGTCAGCTAGCATTAAAAGCTGGTGTGTTTTATGACAAAATATCAAAT
ATGACTATTTGGGGAAACCATTCAACAACTCAGTAAAAGAAGTCATCGAAGATACAAAGT
GGCTAGAAGAGGATTTCACTATAACTGTTCAAAAGCGTGGAGGTGTGCTCATCCAAAAGT
GGGGCAGATCTTCAGCTGCATCAACCGCTGTTTCCATCGTCGATGCAATGAGGTCCCTCG
TAACTCCTACGCCGGAAGGAGACTGGTTCTCTACAGGGGTTTATACGACCGGAAATCCTT
ATGGCATAGTAGATGATATCGTATTCAGTATGCCGTGCAGATCAAAGGGCGATGGCGACT
ATGAACTAGTTAAAGATGTGGCAATGGACGATTTTCTCTGGGGCCGGATCAAAAAGAGTG
AAGCTGAACTGATCGCTGAGAAAAGATGTGTTGCCCATCTTACAGGGGAGGGTAATGCAT
TTTGTGATCTTCCTGGGGATACAATGCTTCCTGGAGAGATGTAGTGCTACTGCTATGGAC
GATACTAGCAATCTGCCAATTGCTACCAAGATGTCATGTTATTATTAGAAGGATCACAGT
GTTCCCAACACCAACAGGAAGAAGGATAGTTGAGAGATGCGACTGCTTGCAGGCTGCAGC
AGCTATTTATCTTGTGTGTATTTAATAAGCACGCAGACATTTGTTGTGCACTAATAATAT
ATAAAGCAAAAGATTT

Homology of Contig U35_1415 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os08g44810.1	434	1e-176	protein\|lactate/malate dehydrogenase, putative, expressed
Brachypodium v1_2	Bradi3g12460.1	441	0.0
Arabidopsis v10	AT5G58330.1	443	3e-153	lactate/malate dehydrogenase family protein \| chr5:23580010-23582287 REVERSE LENGTH=443