barSeed - Barley Seed Development Database

Probe CUST_7724_PI390587928

Source Contig U35_1422

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_7724_PI390587928	Hv_44K_v2	TTATGTGGATGTTGGAATAAAATGCTGGTGATCTATGGCGGCTAGCTTGCTTCCTGGCTA	409	GeneList: midnightblue MasterList: Pathogenesis_Function_Probe_Module

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.010	0.024	0.497	1.690	2.252	3.904
Raw	18.009	474.913	8844.383	45871.467	20667.500	39381.767

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_53422.1	746	2e-24	426 - 485	100	60 / 60	plus	ABC03622 ABC03624
JLOC1	JLOC1_34323.1	746	8e-25	426 - 485	100	60 / 60	plus
Harvest21	ABC03624	1125	3e-25	979 - 1038	100	60 / 60	plus	ABC03624
Harvest21	ABC03622	532	3e-25	410 - 469	100	60 / 60	plus	ABC03622
Harvest35	U35_1422	531	3e-25	410 - 469	100	60 / 60	plus

Contig Sequence (531 bp)

>U35_1422 531 Hv_44K_v2
CCTGGCACTGCGAGAGCGAGCGTGCAGTGAGTAGATAGACTAGACCAACGACGACGGCAG
GCATGGCGATGGCGATGGCGATGGCGATGAGGAAGGAGGCAGCGGTGGCCGTGATGATGG
TGATGGTGGTGACGCTGGCGGCGGGTGCGGACGCGGGAGCGGCGTGCGAGCCGGCGCAGC
TGGCGGTGTGCGCGTCGGCGATCCTGGGCGGGACGAAGCCGAGCGGCGAGTGCTGCGGGA
ACCTGCGGGCACAGCAGGGGTGCTTGTGCCAGTACGTCAAGGACCCCAACTACGGGCACT
ACGTGAGCAGCCCACACGCGCGCGACACCCTCAACTTGTGCGGCATACCCGTACCGCACT
GCTAGCCGCCTAGCCGATCGAGGGCTCCAGGCACGCATGCATGTTCCTGTTATGTGGATG
TTGGAATAAAATGCTGGTGATCTATGGCGGCTAGCTTGCTTCCTGGCTAGCAGCTGCTGT
AATGAAAAAAAAAAAAAAAAATTTTTTTTAGTCCAAAAAAAAAAAAAAAAA

Homology of Contig U35_1422 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None