barSeed - Barley Seed Development Database

Probe CUST_7721_PI390587928

Source Contig U35_1425

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_7721_PI390587928	Hv_44K_v2	CCTGGAATGCTAATGATGGAACTATGCGAGACTTTGGAAAACATGGTTCGGAAACTTATT	628	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK250784.1	1785	2e-24	687 - 746	100	60 / 60	plus	ABC03631 ABC03632 ABC03633
MLOC	MLOC_36547.2	1572	2e-24	533 - 592	100	60 / 60	plus	ABC03631 ABC03632 ABC03633
MLOC	MLOC_36547.1	1524	2e-24	453 - 512	100	60 / 60	plus	ABC03631 ABC03632 ABC03633
MLOC	MLOC_36547.3	1551	2e-24	453 - 512	100	60 / 60	plus	ABC03631 ABC03632 ABC03633
JLOC1	JLOC1_23544.2	1787	8e-25	453 - 512	100	60 / 60	plus
JLOC1	JLOC1_23544.1	1781	8e-25	447 - 506	100	60 / 60	plus
Harvest21	ABC03632	688	3e-25	629 - 688	100	60 / 60	plus	ABC03632
Harvest21	ABC03630	1225	3e-25	694 - 753	100	60 / 60	plus
Harvest35	U35_1426	1937	3e-25	707 - 766	100	60 / 60	plus
Harvest35	U35_1425	688	3e-25	629 - 688	100	60 / 60	plus

Contig Sequence (688 bp)

>U35_1425 688 Hv_44K_v2
GGTCACCCCCTTCTTCCTCCCGGCAGATATCAGGCGGGCGGAGGGAGACGTCCTCGCCGC
GACAGCAGACGCCGTCCTCTGCCCTGTGACCCCGCTGCCGACGGCCGCCGCGCGCGCCGA
AGGTTCTCCTCCCCCATAAAAGGAAACATACGATATGGCTGGGGGTAGCACGGATGCAGC
AACCAAGGAGATGGGGGCATTGCATGTTGGGCAAACCAAGGAAACAAACGATATTCTGAA
AAATGCGTCAGATAGCAATGGTGGCGCCACGGGAGGAGCTCAGTCGTCACCACCAGCAGA
TGATGATGATGCACAAGTGGATGGTCCATCTGAAGATGGAGCAGGAGCTCCAGCGGCTGC
GAAGAAGAAAAAGAAGAAGAGCAAGGCCAAAAAGAAGAAGGACTCCCTTCAGCAGACAGA
TCCTCCATCAATCCCTGTGGATGAGCTTTTCCCTTCAGGAGATTTTCCTGAGGGAGAAAT
CCAGCAATACAAGGATGATAATTTATGGAGAACAACTAGCGAAGAAAAGAGGGAACTGGA
GAGACTACAAAAACCGATGTACAATTCTGTTCGCCGAGCTGCAGAAGTCCATCGACAGGT
ACGAAAATACATGAGGAGCATTATAAAGCCTGGAATGCTAATGATGGAACTATGCGAGAC
TTTGGAAAACATGGTTCGGAAACTTATT

Homology of Contig U35_1425 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os12g43370.1	451	2e-60	protein\|peptidase, M24 family protein, putative, expressed
Brachypodium v1_2	Bradi3g41840.3	432	5e-69
Arabidopsis v10	AT2G44180.1	441	3e-52	\| Symbols: MAP2A \| methionine aminopeptidase 2A \| chr2:18269442-18271785 REVERSE LENGTH=441