barSeed - Barley Seed Development Database

Probe CUST_7720_PI390587928

Source Contig U35_1426

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_7720_PI390587928	Hv_44K_v2	GACACAATGGTTTCTGTGAAGCGCTAAAGTGTTCTTTTAGCAACAAAAGCTGTTGGCAGG	1856	GeneList: turquoise MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.398	1.492	1.108	0.949	0.403	0.404
Raw	1320.389	2190.510	1416.310	1878.899	288.247	311.075

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
JLOC1	JLOC1_23544.2	1787	8e-25	1587 - 1646	100	60 / 60	plus
JLOC1	JLOC1_23544.1	1781	8e-25	1581 - 1640	100	60 / 60	plus
Harvest21	ABC03631	1170	3e-25	21 - 80	100	60 / 60	minus	ABC03631
Harvest35	U35_1426	1937	3e-25	1857 - 1916	100	60 / 60	plus

Contig Sequence (1937 bp)

>U35_1426 1937 Hv_44K_v2
GTCGTAGTCGTACAAAACCTTGTTGCTCTCGCTCGTTCGTGGTCCAAGTCTAACCCTAGC
ACGAGAGCCCCTTCTTCCTCCCGGCAGATATCAGGCGGGCGGAGGGAGACGTCCTCGCCG
CGACAGCAGACGCCGTCCTCTGCCCTGTGACCCCGCTGCCGACGGCCGCCGCGCGCGCCG
AAGGTTCTCCTCCCCCATAAAAGCTTTTGAGATTTATTAGGAAACATACGATATGGCTGG
GGGTAGCACGGATGCAGCAACCAAGGAGATGGGGGCATTGCATGTTGGGCAAACCAAGGA
AACAAACGATATTCTGAAAAATGCGTCAGATAGCAATGGTGGCGCCACGGGAGGAGCTCA
GTCGTCACCACCAGCAGATGATGATGATGCACAAGTGGATGGTCCATCTGAAGATGGAGC
AGGAGCTCCAGCGGCTGCGAAGAAGAAAAAGAAGAAGAGCAAGGCCAAAAAGAAGAAGGA
CTCCCTTCAGCAGACAGATCCTCCATCAATCCCTGTGGATGAGCTTTTCCCTTCAGGAGA
TTTTCCTGAGGGAGAAATCCAGCAATACAAGGATGATAATTTATGGAGAACAACTAGCGA
AGAAAAGAGGGAACTGGAGAGACTACAAAAACCGATGTACAATTCTGTTCGCCGAGCTGC
AGAAGTCCATCGACAGGTACGAAAATACATGAGGAGCATTATAAAGCCTGGAATGCTAAT
GATGGAACTATGCGAGACTTTGGAAAACATGGTTCGGAAACTTATTAAGGAGAATGGACT
GCAAGCTGGTATTGCCTTTCCAACAGGATGCTCGTTGAATTGGGTCGCAGCTCACTGGAC
TCCAAATTCTGGTGATAAAACTGTGCTACAATATGATGATGTGATGAAGCTGGATTTTGG
GACACATATAGATGGGCACATAGTTGATTGTGCATTTACCGTTGCATTTAATCCCATGTT
TGATCCATTGCTTCAAGCAACGAAAGATGCCACAAATACTGGAATCAAGGAAGCTGGAAT
AGATGCACGGCTTTGTGATGTCGGTGCTGCAATTCAAGAAGTCATGGAGTCATATGAGGT
TGAAATTAATGGGAAAGTTTTCCAAGTAAAAAGTGTGCGAAACCTCAATGGACACAGCAT
TGGACCATACCAAATCCATGCTGGTAAATCAGTTCCGATTGTAAAAGGCGGAGAGCAAAC
AAAAATGGAGGAGGGTGAATTTTATGCCATTGAAACTTTTGGGTCTACAGGAAAGGGATT
TGTGAGGGAGGATTTGGAATGCAGTCATTACATGAAGAACTTTGATGTTGGGCATGTACC
CTTGAGGGTAGCAAAAGCCAAGCAGCTACTGGGGACAATCAACAACAACTTTGGTACACT
TGCATTTTGCCGCCGGTACTTGGACCGCATCGGCGAGACCAAATATCTCATGGCACTGAA
AAATCTATGTGATGTTGGCATTGTTCAGCCGTACCCTCCGCTGTGCGACGTGAGGGGAAG
CTATGTGTCCCAGTTTGAGCACACCATTTTGCTCCGGCCAACCTGTAAAGAAGTCATATC
CAGAGGCGACGACTACTGATTGGTGCTGCGTCTCCTCTTTGTACCTGCCGTTGCAAGCGA
TTAGTGTTTTACTACCATCTTGGGTGACCTGTGTTCGTTATGGATCAAATGGCACATCAG
AATCGGACAAATAATGCAGTTACATTGTACCCTTTTGTTTTCTGAGATTAAAATTTGTGG
AAACTGGTTTGTAAGAATTGCTACCGTGTTGTATTGCTTGATCCCTCTATGAAGAATACT
TCCCGAAGATTTTTAAAAAAAAAAAAAAAAATCATTAGCGTGGGACAGCTGAAAATGACA
CAATGGTTTCTGTGAAGCGCTAAAGTGTTCTTTTAGCAACAAAAGCTGTTGGCAGGTTTT
AAAAAAAAAAAAAAAAA

Homology of Contig U35_1426 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	Description
Rice v7	LOC_Os12g43370.1	451	protein\|peptidase, M24 family protein, putative, expressed
Brachypodium v1_2	Bradi3g41840.2	450
Arabidopsis v10	AT3G59990.1	439	\| Symbols: MAP2B \| methionine aminopeptidase 2B \| chr3:22155921-22158551 REVERSE LENGTH=439