barSeed - Barley Seed Development Database

Probe CUST_771_PI390587928

Source Contig U35_22899

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_771_PI390587928	Hv_44K_v2	CATGTGGAAACCCAAACATGTTCCTCTGTTATCTTCTTAATAGTTCCGCTATTTTCATTT	693	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_52210.1	757	2e-24	11 - 70	100	60 / 60	minus	ABC20512 ABC38724
JLOC1	JLOC1_33427.1	753	8e-25	5 - 64	100	60 / 60	minus
Harvest21	ABC38724	608	1e-23	19 - 78	98	59 / 60	minus	ABC38724
Harvest21	ABC20512	614	6e-22	1 - 54	100	54 / 54	minus	ABC20512
Harvest35	U35_22899	818	3e-25	694 - 753	100	60 / 60	plus

Contig Sequence (818 bp)

>U35_22899 818 Hv_44K_v2
GAAGGGGATGAATCAGATGACAAGCAACTATTTTCTGCCTATGCTGAGATTGATGTTCGT
GCTGAAGCTNATGTCATGTTTANTACACGGATTTCTGGTGATAATTGCAATTTGGACTTA
AAATTCAAAGTCCTTTCAGAAAGTGTCGAGGCTGTAATACAAGTATATGCAAAGGTTGAC
CATCCTCACCATGTCAGGTTCACTGCTTTTAGCACCGGATATGATGACTATCCTCATCGT
GGAGTTGTGCTGTTTGATGACAAATTATTTGGTGACAAAAAAATGTTCCAGCATATTGTT
GCGGTGAAAGCAAATGAAGAACTACATGTTTATTTAGAAGTGAACGGTTCAGTGTTCCAG
TGGACTTTTCAAGATGAACATGTCGGAGCTGTTACTTCTCCTGATGACTCAATCTTTGAG
TATGGCCAGTTCTTCGTGAGGGTGATATTTGCTCCAAAGGATTGTCAGTGAAGCTCAGCT
CCAACATTCTGACAGTGTCGCCATTGGCTGAAATCCTAAAGATCATGAAAAAGTGTTTGC
TGCTTTTCTTGGTATTGTATATGAGTAGCAGTTGAATTTATCCTCTTAAGCCCTCTTAGG
CAGACATCAGAAGTATCATATTTTTATAGCCTGAACCTCATGAAAACAAGAGAGAACGTA
TTGACCTTTATGTGGCCTACCCTTGTAATATGACATGTGGAAACCCAAACATGTTCCTCT
GTTATCTTCTTAATAGTTCCGCTATTTTCATTTTAATTTGGATGCATCCTTATAATTTGT
CTGCATGGTGTATTGCTATGTAAAAAAAAAAAAAAAAA

Homology of Contig U35_22899 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None