barSeed - Barley Seed Development Database

Probe CUST_7711_PI390587928

Source Contig U35_1435

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_7711_PI390587928	Hv_44K_v2	TGTTGTTGTTACCGTGCTGTGAGATTGTGTAATGCCTGAATAAGGGGAATTCTGGGGGTT	1270	GeneList: darkolivegreen MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.464	0.613	0.830	1.629	1.237	1.539
Raw	577.374	1190.815	1451.725	4465.177	1192.306	1590.310

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_36980.1	3046	2e-24	2940 - 2999	100	60 / 60	plus	ABC04073 ABC04074
MLOC	MLOC_36980.4	1343	2e-24	1163 - 1222	100	60 / 60	plus	ABC04073 ABC04074
MLOC	MLOC_36980.3	1371	2e-24	1201 - 1260	100	60 / 60	plus	ABC04073 ABC04074
MLOC	MLOC_36980.2	1537	2e-24	1357 - 1416	100	60 / 60	plus	ABC04073 ABC04074
JLOC1	JLOC1_23884.3	1531	8e-25	1274 - 1333	100	60 / 60	plus
JLOC1	JLOC1_23884.2	1478	8e-25	1221 - 1280	100	60 / 60	plus
JLOC1	JLOC1_23884.1	1461	8e-25	1204 - 1263	100	60 / 60	plus
Harvest21	ABC04074	1477	3e-25	1271 - 1330	100	60 / 60	plus	ABC04074
Harvest35	U35_1435	1473	3e-25	1271 - 1330	100	60 / 60	plus

Contig Sequence (1473 bp)

>U35_1435 1473 Hv_44K_v2
TTGCAGTAAATATCGAGAGTTGAGACTTAAGACCGTGGCCGGCTGATACTCGTCAGTCGT
CACACAGCGCATGAGAGAGACTCGCCAAATTTGCTGCAGATCTCTCGTCGGCTCAGCAAC
CAGCAACCGGCGTTAGCTGGCCCTCTTCCTTCCCTCCCGCATGGCGACTGAAGCCGTAGG
CACCATGTCCATGTTCCCAGGGATGGACCTTACCAAAATGGACCCTCCAACACTTACCCT
CCTTGGAGCAGCCTGTTGTGTAATGTTATCGATGCATTTCACAGTGCAGTTGGTATCACA
ACATCTTTTCTATTGGAAAAATCCCAAAGAGCAGAAGGCTATACTCATCATTGTGCTAAT
GGCTCCACTCTATGCTATAACTTCCTTTGTTGGCCTTCTGGATATTAAGGGAAGCAAAAC
GTTTTTTACATGCTTGGAGTCTGTTAAAGGATGCTATGAGGCACTGGTTATTGCTAAGTT
TCTGGCATTGATGTACAGCTACTTGAATATATCTATTAGCAAAAACATTGTACCTGATGA
AATCAAAGGGAGGGCTCTTCATCATTCTTTCCCTGTCTCTCTTTTCCTGCCCCGCAATGT
TCGGTTGGAGCACAAGACACTAAAGCTTCTGAAGTACTGGACCTGGCAATTTGTTGTTGT
TAGGCCTGTATGCTCCATTCTGATTATCGCACTTCAGCTTATTGGGCTGTACCCCAGCTG
GGTCAGTTGGACGTTCACAATTATACTGAACTTGTCAGTCTCCATGGCACTGTATGCCTT
GGTCATTTTCTATCACTTGTTTGCCAAGGAGTTGGCACCTCACAAGCCTCTTGCGAAGTT
CTTGTGCATCAAAGGGATTGTCTTCTTCTCTTTCTGGCAGGGCTGTGCGCTGGATGTTTT
GGCTGCTGTAGGGGTGATTCAGTCTCACCATTTCTGGCTGGACGTGGAGCACATCCAGGA
GGCAATCCAGAATGTCTTGATTATCCTGGAAATGGTCATCTTCTCGGTACTCCAGCAGTA
TGCGTACCATGTCGCTCCGTACAGCGGCGCTGACAAGGCGAAATCTGTGAAGAAGAACGA
ATGATCCAGGGCTTCGTGCCAAGCGACATCTGCAGCTGGTTCTTGTATGGTTTTGTGTGT
ATGTGCTGGGAGTATTGATTCAAGATGTTATAGGACATGTGCATTTCCTTGTGGACACGT
GTAGAGTGAGTCGTCGTTATACCTTGAACACTAGAGAAACGACATGATCAGGATCAACAC
ATAGGAAAGCTGTTGTTGTTACCGTGCTGTGAGATTGTGTAATGCCTGAATAAGGGGAAT
TCTGGGGGTTCCCCGCCCTGAATTTCGTCCGGAATAAATGGCGGTTTCGTGTCGCCCAAA
TCAAAAAAAAAAAAAAAAAAAACCAAAACTTGTCTGAGCTTATCACAGTGCTATGCGTCC
AGGTGGGTTGGAGTGCCCATTGTTGTTGCAATT

Homology of Contig U35_1435 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os07g32230.1	302	0.0	protein\|domain of unknown function domain containing protein, expressed
Brachypodium v1_2	Bradi2g60990.1	300	0.0
Arabidopsis v10	AT4G21570.1	294	6e-161	Protein of unknown function (DUF300) \| chr4:11471126-11472269 REVERSE LENGTH=294