barSeed - Barley Seed Development Database

Probe CUST_7710_PI390587928

Source Contig U35_1436

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_7710_PI390587928	Hv_44K_v2	TTTGGGGTTTTCCCGCTCCAAGATGGAGTCCTGAATAAATGTGGTTTCCTGCTGAAAAAA	1307	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_72096.1	4262	7e-23	111 - 167	100	57 / 57	minus	ABC04073 ABC04074
JLOC1	JLOC1_47960.1	1472	4e-23	1128 - 1184	100	57 / 57	plus
Harvest21	ABC04073	1250	3e-25	1180 - 1239	100	60 / 60	plus	ABC04073
Harvest35	U35_1436	1379	3e-25	1308 - 1367	100	60 / 60	plus

Contig Sequence (1379 bp)

>U35_1436 1379 Hv_44K_v2
TATAAGTAGTAAGCCCACCCCAAGATGAGTGCTCTCTCCCTCGCAGAAAAAACCTGCTCC
CACGCGGGTCGCGAGGAGAACAAACAAGTCTCTGCACGGCTGCACCGGAGCAGGAACCGA
GAGAGAGAGAGAAGCTCTGCCCCTGAGCTCCTCCGCCGGCATGGAGATCCTTCAACAAGG
CACTATGTCGATGTTCCCTGGGATGGATCTTACGAAAATGGATCCTCCAACTCTTACCCT
CCTTGGAGCAGCTTGTTGTGTAATGTTGTCTATGCATTTCACAATACAGCTGGTATCACA
GCATCTTTTTTATTGGAAAAATCCCAAAGAGCAGAAGGCTATACTCATTATAGTGCTGAT
GCCTCCATTGTATGCTATGACTTCCTTTGCTGGTCTTCTGGATATTAAGGGAAGCAAAAC
GTTTTTTACATGCTTGGAGTCTGTTAAAGAATGTTATGAAGCACTGGTTATTGCTAAGTT
TCTGGCATTGATGTACAGCTACTTAAATATATCTATCAGTAAAAACATCGTACCTGATGA
AATCAAAGGGAGGGTGCTTCATCATTCTTTCCCTGTTTCTCTTTTCCTGCCCCGTAATGT
TCGGTTGGAGCACAAGACACTTAAGCTTCTGAAGTACTGGACCTGGCAATTTGTTGTTGT
TAGGCCTGTATGCTCCATTCTGATTATTGTACTTCAGCTTCTTGGGTTGTACCCCAGCTG
GGTCAGCTGGACGTTCACAATTATATTGAACTTTTCAGTCTCCATGGCATTATATGCCTT
GGTCATATTCTATCACTTGTTTGCTAAGGAGCTGGCACCTCACAAGCCTCTTGCAAAGTT
CTTGTGCATCAAAGGGATTGTCTTCTTCTCTTTCTGGCAGGGCTGTGCCTTGGATGTTTT
GGCTGCTGTAGGGTTTATTCAATCTCACCATTTCTGGCTGGACGTGGAGCACATCCAGGA
GGCAATCCAGAATGTCTTGATTATCCTGGAAATGGTCATCTTCTCAGTTCTCCAGCAATA
CGCATATCACGTTGCTCCGTACAGTGGCGCTGACAAGGCAAAATTCGAGAAGAAGAATGA
ATGATCCGCCAAGCAACATAAGCAGCTTGTTCTTGTATGGTTTTGTGTGTTTGTGCTGGG
AACACGGATTCAACATGCTATAGGACATGCATTTCCTTTTGGGCATGTGTAGAGTGAGTC
GTTATACGTTGAACAATAGAATACCGAGATGTCCAGGATTCAGGAACATGCAGGAATGGC
ACTGTTATTTGCGCTGTGAAACTATGTAATGCACCAATAAGGAGAATTTTGGGGTTTTCC
CGCTCCAAGATGGAGTCCTGAATAAATGTGGTTTCCTGCTGAAAAAAAAAAAAAAAAAG

Homology of Contig U35_1436 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os07g32230.1	302	0.0	protein\|domain of unknown function domain containing protein, expressed
Brachypodium v1_2	Bradi2g60990.1	300	0.0
Arabidopsis v10	AT4G21570.1	294	6e-163	Protein of unknown function (DUF300) \| chr4:11471126-11472269 REVERSE LENGTH=294