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Probe Details

Probe IDChipProbe Sequence (60 bp)Probe locationDifferentially Expressed
CUST_769_PI390587928Hv_44K_v2CCCATTTGTTGTGGAAAAGGAGTAAACCACCAAAGTTTCCCACTCGATACAATTTCACTA1261GeneList: tan
MasterList: None



Probe Values

3 dpa4 dpa5 dpa6 dpa7 dpa8 dpa
Normalized 0.5010.7671.5361.7570.9510.967
Raw 131.454320.386556.997991.745191.124212.009



Probe Sequence's BLAST hits in Barley Unigene Datasets

DatasetHitHit LengthE-valuePosition on Hit% IdentityMatchDirectionProbes on Sequence
MLOCAK35425929192e-242167 - 222610060 / 60plus ABC12437
MLOCAK248262.129582e-242251 - 231010060 / 60plus ABC12437
MLOCMLOC_52334.25972e-2443 - 10210060 / 60minus None
MLOCMLOC_52334.13132e-2443 - 10210060 / 60minus None
MLOCMLOC_28732.23163e-21215 - 2719856 / 57plus None
MLOCMLOC_28732.14343e-21333 - 3899856 / 57plus None
JLOC1JLOC1_33525.13528e-2543 - 10210060 / 60minus
JLOC1JLOC1_19230.12762e-21177 - 2339856 / 57plus
Harvest21ABC1116913213e-251262 - 132110060 / 60plus
Harvest35U35_1944413213e-251262 - 132110060 / 60plus



Contig Sequence (1321 bp)

>U35_19444 1321 Hv_44K_v2
GTCAGCGAGGCCGCCATTGCTGATAGCGAGAGGATCGTGCGGGAAGAGTTCGAGGCGCTG
CACAAGCAGCTCGTGCTTCTCAAGCAGAAGCAGGCGCTACTCCTTGACACGCTCCGCCAT
CTCGAGACAGAAAAGGTTGATTTGGAGAATACCCTCGTTGATGAGAGCCAAAGACAGTCG
AAAGAGTATGGATCTGCTTCCAGACCAAGGACTGAGAAGCTTAGTGAAGGAAGTGCTAGC
GAATCTGATGATTACAATGAACCACAAGATCCTGCTGAAGAGGAGACTGACGATGAAGAG
AACATATATTTTGATACAACTGATTTCCTTTCATCTAGTTCTTTTAAAAGCAGTGGATCT
GATTTCCAAAGATCTGAAGCTGGTTCAGATTATGAGGATGACTACCCGATGGATGGAATT
GATCCTTCTATGAAGTCTGTTGGAATTAATTATCCTTATGTGAGAAGGCGTAAGAAGCTG
CCAGATCCAGTTGAGAAAGAGAAGGGTGTAAGTTTGTGGTCAATGATCAAGGACAATATA
GGAAAGGATCTTACCAAAGTCTGTCTGCCTGTTTACTTCAATGAACCTCTTTCATCATTA
CAAAAATGTTTCGAGGATCTTGAGTATTCCTACCTTATTGATCGTGCATATGAATGGGGC
AAAAGGGGGGATAGTCTGATGAGGATTCTAAGCGTTGCAGCATTTGCTGTTTCTGGTTAT
GCCTCTACGGATGGAAGGAGTTGTAAGCCCTTCAACCCCCTTCTTGGGGAGACCTATGAA
GCAGATTATCCAGACAAAGGTCTTCGTTTTTTCTCAGAAAAGGTCAGTCATCATCCAATG
GTTGTTGCATGCCACTGTGAGGGAAATGGCTGGAGATTTTGGGCAGATAGCAACCTAAAG
AGCAAGTTCTGGGGGCGCTCCATTCAACTTGATCCTGTTGGTGTGTTAACACTGGAGTTT
GATGATGGCGAAGTTTTCCAGTGGAGCAAGGTGACCACTTCCATTTACAATCTCATATTG
GGTAAACTGTATTGTGATCACTATGGTACTATGCGCATTCAAGGTAATCGTGAATATTCA
TGTAAGCTGAAGTTCAAGGAGCAGTCAATTATTGATCGCAACCCTCATCAGGTCCAAGGT
GTTATTCAGGACCGAAGTGGTCGAACTGTTGCTACACTCTTTGGTAAATGGGATGAAAGC
ATGCACTACGTTATGGGTGATTGCTTTGGAAAAGGCAAGGGATCTGAGAATTTTTCAGAG
GCCCATTTGTTGTGGAAAAGGAGTAAACCACCAAAGTTTCCCACTCGATACAATTTCACT
A



Homology of Contig U35_19444 to Model Species (E-value threshold 1e-50)

Pseudo-peptide datasetHitHit lengthE-valueDescription
Rice v7LOC_Os03g49770.18050.0protein|oxysterol-binding protein, putative, expressed
Brachypodium v1_2Bradi1g11027.18090.0
Arabidopsis v10AT4G08180.18140.0| Symbols: ORP1C | OSBP(oxysterol binding protein)-related protein 1C | chr4:5169727-5173360 FORWARD LENGTH=814