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Probe Details

Probe IDChipProbe Sequence (60 bp)Probe locationDifferentially Expressed
CUST_7699_PI390587928Hv_44K_v2AGTAACAAGACTATTGCCGTTTTCTTTACAGATCTCCAGAGCTAATGTTTCTTGTCCACC538GeneList: saddlebrown
MasterList: None



Probe Values

3 dpa4 dpa5 dpa6 dpa7 dpa8 dpa
Normalized 0.1460.3851.3271.2840.9621.273
Raw 10.79441.799135.450177.42452.98579.338



Probe Sequence's BLAST hits in Barley Unigene Datasets

DatasetHitHit LengthE-valuePosition on Hit% IdentityMatchDirectionProbes on Sequence
Harvest21ABC280964723e-25233 - 29210060 / 60plus
Harvest35U35_14477783e-25539 - 59810060 / 60plus



Contig Sequence (778 bp)

>U35_1447 778 Hv_44K_v2
GGTACCATAGAGATCTCAAGCCAGAAAACCTGCTCCTTGATTCATATGGAGCTCTCAAAG
TTTCAGACTTCGGTCTCAGCGCATTTTCTCCGCAAACAAAAGTATGATCTCTACCTAGTT
GGCTAGTAGCTAGAAGTATGCATTTCTTTTCATTTTCAGAAACATAAGGTACTGTGCTTG
AGCACGAGAAAGAGTTAACGGAAAGAGTATTGATCACCTCGTTTTTATTTTTACTTTAGG
ATGATGGACTTCTGCATACTGCTTGTGGAACACCAAATTATGTTGCACCTGAGGTGATTT
TTTTTGCCTTTGTGTTTCTAGCTTGTCTAAAAAATATGTTTAGCAGTGTAATTACTGATT
TTTTTTTCTTTAGGTGCTTGCTGATAAAGGTTATGATGGTATGGCTGCTGATGTGTGGTC
CTGTGGCATAATCTTATTTGTCCTTATGGCTGGATATTTGCCCTTTGATGACCCTAACTT
AATGACTCTGTATAAATTGGTAAGTTGCTGCCGTAGACATGCCTTTCTTGTCATTGGTAG
TAACAAGACTATTGCCGTTTTCTTTACAGATCTCCAGAGCTAATGTTTCTTGTCCACCCT
GGTTTTCTACGGGTGCAAGAAATCTTATTAAGCGCATTCTCGATCCCAATCCTCACACTA
GGATAACAATCGCCCAAATTTTGGAAGATGAATGGTTCAAGAAGGACTATAAACCACCTT
TTTCTGAGCACAATGAAGATGTGAGCCTTGAAGATGTCGACGCTGCATTCGATAGTTC



Homology of Contig U35_1447 to Model Species (E-value threshold 1e-50)

Pseudo-peptide datasetHitHit lengthE-valueDescription
Rice v7None
Brachypodium v1_2None
Arabidopsis v10None