barSeed - Barley Seed Development Database

Probe CUST_7697_PI390587928

Source Contig U35_1449

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_7697_PI390587928	Hv_44K_v2	TTGGGTGGGCACATGTTTTGGCTCACAAGTATTAAAAAAGGAAGCTGATTGCACAAAAAA	1905	GeneList: turquoise MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.338	1.362	1.149	0.891	0.319	0.424
Raw	7905.207	12438.533	9217.270	11082.400	1359.233	2072.333

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
Harvest35	U35_1449	1976	3e-25	1906 - 1965	100	60 / 60	plus

Contig Sequence (1976 bp)

>U35_1449 1976 Hv_44K_v2
ATACCAACAAAGTGTCCCCTCCCACCCCTCTCACGCCGCCGCCGCCGCAACCCTGAAAAC
CTAACCAAACCCCCCAGCGCCACACCATGGCGTCCGCCTACGACCGGGAGGACGGCCTCG
CGCCGCCGCAGCCGCACGGCGGCGGCCCCGCCGACGCCTACGATCCCAACTACGTCCCGG
ACTCGGTGAAGACCTTCGTGGTGCACCTGTACCGCCACATCCGCGACAAGAACGTCTACG
AGATCCACCAGATGTACGAGGGCGGCTTCCAGCGTCTCTCCGACCGCCTCTTCCGCGACA
CGCCCTGGCCGTCGGCGGAGGCCGTGGCGCCCTACTGCGACGGCGACCACGTCTTCCTCC
TCCTCTACCGCGAGCTATGGTACCGCCACGCCTACGCGCGCCTCTCCCCCCTCACCGCCA
GCCACCGCTCCGAGTCCTGGAACAACTACTGCGACCTCTTCAGCGTCGTCCTCCACGGCG
TCGTCAACATGCAGCTGCCTAACCAGTGGCTGTGGGACATGGTGGACGAGTTCGTCTACC
AGTTCCAGAGCTTCTGCCAGTACCGCGCCAAGCTCAAGAACAAGACGGAAGACGAGCTCC
AGCAGCTAAAGCAGTTTGACAAGGCATGGAATGTCTATGGGGTTCTCAATTACCTGCAAG
CACTCGTCGAGAAGTCCATGATCGCACAGATTCTGGAGAGGGAGAAAGAGGGGCTGGAGT
CGTTTACTGCCACCGACGGGTATGACTACCAGGGTGGGAGCAATGTGCTCAAGGTCCTGG
GTTACTACAGCATGATTGGGCTTCTCAGGATACACTGCCTTCTTGGCGATTACCACACTG
GCCTGAAGTGCTTGGCACCGATTAACCTTAACCAGCAGGGGGTCTACACCATTGTCATTG
GGAGTCACATCTCGACGATCTATCATTATGGATTTGCAAACCTTATGATGCGCAGGTATG
TTGATGCTACCAAGGAATTCAACAAAATTCTGCTTTATATTATAAAGTATAAGCAGTACC
ATCAGAAATCCCCTCAGTACGACCAGATTCTGAAGAAAAATGAGCAGATGTATGCGCTGC
TGGCAATTTGCCTATCTCTGTGTCCGCAAAACAAACTCATAGATGAAAATGTTAGCACCC
AGCTGAAAGAAAAGTACAATGACAAAATGACAAAGATGCAGAGGTTTGATGATGAAGCAT
ATGCTGCCTATGATGAGCTATTTTCGTACGCCTGCCCCAAGTTTATTACTCCATCACCTC
CAGTTCTGGACCAGCCACTTACAAATTATAACCAGGACGCCTATCGGCTTCAGTTGAAGC
TGTTCCTTTATGAAGTGAAGCAGCAACAGCTCCTTTCTGGTATCCGGAGCTATCTAAAGT
TATACTCAGCAATTACCATTACCAAACTTGCCCAGTATATGGAAATGGATGAGGCAACAC
TTAGGTCTATTCTTATGACGTACAAGCACAAAATGCATGCAGTTGACAGTAATGGGAAAA
TTGTATCCAGTGCAGACTTTGATTTCTATATTAATGAGGATGTTATTCATGTCGTGGAGT
CCAAGTCGACCAAGCGCCATGGGGACTACTTTTTAAGACAGATTTTAAAGTTTGAAGAAA
CCATTGCTGAATTGGACAAGGTACAGCTTGACTGAGCATGGTAAAGATCATCGAGGAGAG
AAACATCCCAGATCATGTTTTCATTTTCCTTTTTCCTTTTACGGGAGACACTTGTGGCGA
CTAATGTTAGCAGAGCATTATTTGTGCCTTCTAGTACACAGTTTGACTCGGTGAAGCATT
GGCAATTCACTGTATTATCCTGTTTTTTTAGTTCCTGTTTGCTATTTGATGAGTAATCCG
TCAGTTACTAGTTGAGAACTTGAGATACCTTCCGTGTTTATCCAATTGGGTGGGCACATG
TTTTGGCTCACAAGTATTAAAAAAGGAAGCTGATTGCACAAAAAAAAAAAAAAAAA

Homology of Contig U35_1449 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	Description
Rice v7	LOC_Os01g12870.1	522	protein\|eukaryotic translation initiation factor 3 subunit E-interacting protein, putative, expressed
Brachypodium v1_2	Bradi2g07690.1	522
Arabidopsis v10	AT5G25757.1	514	RNA polymerase I-associated factor PAF67 \| chr5:8965515-8967460 REVERSE LENGTH=514