- Probe CUST_7696_PI390587928
- Source Contig U35_1450
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_7696_PI390587928 | Hv_44K_v2 | GAGAGCTATGTTCTCTAGGTTTTTATTTTTAGAGAGAGAGAGAGAGCCATGTTCTCTAGT | 520 | GeneList: turquoise MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 1.226 | 1.248 | 1.403 | 0.929 | 0.397 | 0.331 |
| Raw | 1659.677 | 2659.050 | 2602.547 | 2601.113 | 407.573 | 370.427 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | MLOC_69179.5 | 1269 | 2e-24 | 1139 - 1198 | 100 | 60 / 60 | plus | ABC27051 ABC39357 |
| MLOC | MLOC_69179.1 | 2197 | 2e-24 | 1612 - 1671 | 100 | 60 / 60 | plus | ABC27051 ABC30759 ABC39357 |
| MLOC | AK370303 | 2244 | 9e-22 | 1639 - 1700 | 97 | 60 / 62 | plus | ABC27051 ABC30759 ABC39357 |
| MLOC | MLOC_69179.4 | 1726 | 9e-22 | 1548 - 1609 | 97 | 60 / 62 | plus | ABC27051 ABC39357 |
| JLOC1 | JLOC1_45830.1 | 2101 | 8e-25 | 1606 - 1665 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC39357 | 583 | 3e-25 | 116 - 175 | 100 | 60 / 60 | minus | ABC39357 |
| Harvest21 | ABC04169 | 1957 | 3e-25 | 1778 - 1837 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC27051 | 462 | 2e-22 | 294 - 355 | 97 | 60 / 62 | plus | ABC27051 |
| Harvest21 | ABC04167 | 795 | 2e-22 | 117 - 178 | 97 | 60 / 62 | minus | |
| Harvest35 | U35_1452 | 1943 | 3e-25 | 1764 - 1823 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_1450 | 695 | 3e-25 | 521 - 580 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_1451 | 795 | 2e-22 | 618 - 679 | 97 | 60 / 62 | plus |
Contig Sequence (695 bp)
>U35_1450 695 Hv_44K_v2 GCACGAGGCAGTCTGGGGCAAAGCCCCGTCAAAGATTATTGCTTCCTATCAGACAACAAA GGGAGAAACAAAAACCAGTCTTCTCTTGACTTCTGGATGGTGGGGCTTTTCTCGTCACTT TCACTATGCCCCAGAGATCCTAGCAGCATTTTTCTGGACCGTTCCAGCTCTTTTCACTCA TTTTATGCCATACTTCTATGTGATATTTCTGACCATTCTACTGCTTGACCGAGCGAAGAG GGATGATGATAGATGCTCAACAAAGTACGGCAAGTACTGGAAGATGTACTGCAACAGAGT ACCTTACAGGGTTGTTCCTGGTATTTACTGAATGGTGTACTCTGCAACTCACGAGAAGAA AGCAATGGTAGCTTGTATGTACCCTTCACATGGGCCGTTCGTTGCTCTGCTACTATGATA GAGGGAATCGGGCGTAATCTTCTTCTAGTGTGTATCAAGCTTTTTCACATGATTTTAGTC TCTAGCAGGGCAAATGAAAATGAACTACTCTTATTATTGAGAGAGCTATGTTCTCTAGGT TTTTATTTTTAGAGAGAGAGAGAGAGCCATGTTCTCTAGTTTCACTTTGATGAGTACTCC TGAGCAACAGTATATTGATTTCGTAAACTATTGTTATGATTGGAAAAGCGGAGCCCTGAA ATAATATTTTTTCTTGCCAAAAAAAAAAAAAAAAA
Homology of Contig U35_1450 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | None | |||
| Brachypodium v1_2 | Bradi3g43120.2 | 454 | 3e-57 | |
| Arabidopsis v10 | None |