- Probe CUST_7695_PI390587928
- Source Contig U35_1451
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_7695_PI390587928 | Hv_44K_v2 | TATTTTTAGAGAGAGAGAGAGAGAGCCATGTTCTCTAGTTTCACTTTGATGAGTACTCCT | 640 | GeneList: green MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 1.205 | 1.312 | 1.320 | 0.879 | 0.366 | 0.313 |
| Raw | 3620.250 | 6183.873 | 5478.937 | 5549.673 | 841.836 | 775.926 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | AK370303 | 2244 | 2e-24 | 1662 - 1721 | 100 | 60 / 60 | plus | ABC27051 ABC30759 ABC39357 |
| MLOC | MLOC_69179.4 | 1726 | 2e-24 | 1571 - 1630 | 100 | 60 / 60 | plus | ABC27051 ABC39357 |
| JLOC1 | JLOC1_45830.1 | 2101 | 6e-21 | 1629 - 1686 | 97 | 58 / 60 | plus | |
| Harvest21 | ABC27051 | 462 | 3e-25 | 317 - 376 | 100 | 60 / 60 | plus | ABC27051 |
| Harvest21 | ABC04167 | 795 | 3e-25 | 96 - 155 | 100 | 60 / 60 | minus | |
| Harvest21 | ABC39357 | 583 | 2e-21 | 95 - 152 | 97 | 58 / 60 | minus | ABC39357 |
| Harvest21 | ABC04169 | 1957 | 2e-21 | 1801 - 1858 | 97 | 58 / 60 | plus | |
| Harvest35 | U35_1451 | 795 | 3e-25 | 641 - 700 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_1452 | 1943 | 2e-21 | 1787 - 1844 | 97 | 58 / 60 | plus | |
| Harvest35 | U35_1450 | 695 | 2e-21 | 544 - 601 | 97 | 58 / 60 | plus |
Contig Sequence (795 bp)
>U35_1451 795 Hv_44K_v2 GTGATCGTCAGCGCCAAGAATTTCGCCGGACAAACGGGAAAGCCACAGTCTGGGGCAAAG CNCCGTCAAAGATTATTGCTTCCTATCAGACAACAAAGGGAGAAACAAAAACCAGTCTTC TCTTGACTTCTGGATGGTGGGGCTTTTCTCGTCACTTTCACTATGCCCCAGAGATCCTAG CAGCATTTTTCTGGACCGTTCCAGCTCTTTTCACTCATTTTATGCCATACTTCTATGTGA TATTTCTGACCATTCTACTGCTTGACCGAGCGAAGAGGGATGATGATAGATGCTCAACAA AGTACGGCAAGTACTGGAAGATGTACTGCAACAGAGTACCTTACAGGGTTGTTCCTGGTA TTTACTGAATGGTGTACTCTGCAACTCACGAGAAGAAAGCAAGTAAGCTGCTGATGTGAT TCTCTCCCGCTTCAGTGGCCTGGTACTATCAGCATTTGTGTAGTAATGATGTCGTTAGCT TTGATGCGTGCAGTGGTAGCTTGTATGTACCCTTCACATGGGCCTCGGGCGTAATCTTCT TCTAGTGTGTATCAAGCTTTTTCACATGATTTTAGTCTCTAGCAGGGCAAATGAAAATGA ACTACTCTTATTATTGAGAGAGCTATGTTCTCTAGGTTTTTATTTTTAGAGAGAGAGAGA GAGAGCCATGTTCTCTAGTTTCACTTTGATGAGTACTCCTGAGCAACAGTATATTGATTT TGTAAACTATTGTTATGATTGGAAAAGCGGAGCCCTGAAATAATAAATTTTCTTGCCAAA AAAAAAAAAAAAAAA
Homology of Contig U35_1451 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | None | |||
| Brachypodium v1_2 | Bradi3g43120.2 | 454 | 6e-67 | |
| Arabidopsis v10 | AT1G50430.1 | 432 | 3e-59 | | Symbols: DWF5, PA, LE, ST7R, 7RED | Ergosterol biosynthesis ERG4/ERG24 family | chr1:18682175-18685555 REVERSE LENGTH=432 |