barSeed - Barley Seed Development Database

Probe CUST_7694_PI390587928

Source Contig U35_1452

barSeed

Links

Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_7694_PI390587928	Hv_44K_v2	TATTTTTAGAGAGAGAGAGAGAGCCATGTTCTCTAGTTTCACTTTGATGAGTACTCCTGA	1786	GeneList: green MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.234	1.289	1.306	0.904	0.358	0.317
Raw	3743.177	6167.120	5504.210	5886.770	824.967	798.236

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_69179.5	1269	2e-24	1162 - 1221	100	60 / 60	plus	ABC27051 ABC39357
MLOC	MLOC_69179.1	2197	2e-24	1635 - 1694	100	60 / 60	plus	ABC27051 ABC30759 ABC39357
MLOC	AK370303	2244	9e-22	1662 - 1723	97	60 / 62	plus	ABC27051 ABC30759 ABC39357
MLOC	MLOC_69179.4	1726	9e-22	1571 - 1632	97	60 / 62	plus	ABC27051 ABC39357
JLOC1	JLOC1_45830.1	2101	8e-25	1629 - 1688	100	60 / 60	plus
Harvest21	ABC39357	583	3e-25	93 - 152	100	60 / 60	minus	ABC39357
Harvest21	ABC04169	1957	3e-25	1801 - 1860	100	60 / 60	plus
Harvest21	ABC27051	462	2e-22	317 - 378	97	60 / 62	plus	ABC27051
Harvest21	ABC04167	795	2e-22	94 - 155	97	60 / 62	minus
Harvest21	ABC45939	467	6e-22	93 - 152	97	58 / 60	minus
Harvest35	U35_1452	1943	3e-25	1787 - 1846	100	60 / 60	plus
Harvest35	U35_1450	695	3e-25	544 - 603	100	60 / 60	plus
Harvest35	U35_1451	795	2e-22	641 - 702	97	60 / 62	plus

Contig Sequence (1943 bp)

>U35_1452 1943 Hv_44K_v2
GTTGGCCCGACGACAACGACGACGGCGGCGGCGGTGGCCACAGATCCACACATCCTCCTT
AATAAACAATCGGCACCCCAGTCCACTCCCCCTCCACGCGCGCGCGAGATCGAGAGGACC
AGGCGCCATGGGGAAGCAGCAGCAGCAGCCCAAGCCGGCCCCCGCGGCGCCGCCGCCCCA
GCCGTCCAAGACGGCGCACTCGCCGTTGTTAACCTACGCCTCCATGGTCACGCTCTTGTC
CCTCTGCCCGCCCTTCGTCATCCTCCTGTGGTACACCATGGTGCACGCGGACGGATCGGT
GCTGCAGATCTACGAGCACCTCCGCGACCACGGGATCCTGGAGGGGCTCAAGGCCATCTG
GCCCGCGCCCACCCTCGTCGCCGGGAAGATCATCCTCGGCTTCGCTCTCTTCGAGGCCGC
CCTGCAGCTGCTCCTCCCCGGGAAGCGCTTCGAGGGGCCCATCTCGCCCTCCGGCAATGT
GCCCGTCTACAAGGCAAATGGTTTACTAGCATATGCAGTGACTTTGCTCACCTACCTAAG
CCTCTGGTGGTTTGGAATTTTTAACCCTGCGATAGTGTATGATCACCTGGGAGAGATATA
CTCTGCTCTGGTCTTTGGAAGCCTTGTGTTCTGTTTATTGCTGTACATAAAGGGCCATGT
AGCACCATCTTCATCTGATTCCGGATCCGCAGGGAATGTGATAATTGATTTCTACTGGGG
AATGGAACTATATCCGCGGATTGGTAAGCACTTCGATATCAAAGTCTTCACAAACTGCCG
TTTTGGGATGATGTCCTGGGCTGTTCTTGCTGTAACCTACTGCATAAAGCAGTATGAAAT
GAATGGCCGAGTTGCAGACTCCATGCTTGTGAATACTGCACTGATGTTGATCTATATCAC
AAAGTTTTTCTGGTGGGAGTCTGGATATTGGTGTACTATGGACATTGCACATGATAGAGC
TGGTTTCTACATTTGCTGGGGATGCTTGGTATGGGTTCCATCAATTTACACCTCTCCTGG
AATGTACCTTGTCAATCATCCTGTGAATTTGGGTCCCCAGCTAGCACTCTCGATTCTCCT
TGCTGGAATATTGTGCATATACATAAACTATGACTGTGATCGTCAGCGCCAAGAATTTCG
CCGGACAAACGGGAAAGCCACAGTCTGGGGCAAAGCCCCGTCAAAGATTATTGCTTCCTA
TCAGACAACAAAGGGAGAAACAAAAACCAGTCTTCTCTTGACTTCTGGATGGTGGGGCTT
TTCTCGTCACTTTCACTATGCCCCAGAGATCCTAGCAGCATTTTTCTGGACCGTTCCAGC
TCTTTTCACTCATTTTATGCCATACTTCTATGTGATATTTCTGACCATTCTACTGCTTGA
CCGAGCGAAGAGGGATGATGATAGATGCTCAACAAAGTACGGCAAGTACTGGAAGATGTA
CTGCAACAGAGTACCTTACAGGGTTGTTCCTGGTATTTACTGAATGGTGTACTCTGCAAC
TCACGAGAAGAAAGCAAGTAAGCTGCTGATGTGATTCTCTCCCGCTTCAGTGGCCTGGTA
CTATCAGCATTTGTGTAGTAATGATGTCGTTAGCTTTGATGCGTGCAGTGGTAGCTTGTA
TGTACCCTTCACATGGGCCGTTCGTTGCTCTGCTACTATGATAGAGGGAATCGGGCGTAA
TCTTCTTCTAGTGTGTATCAAGCTTTTTCACATGATTTTAGTCTCTAGCAGGGCAAATGA
AAATGAACTACTCTTATTATTGAGAGAGCTATGTTCTCTAGGTTTTTATTTTTAGAGAGA
GAGAGAGAGCCATGTTCTCTAGTTTCACTTTGATGAGTACTCCTGAGCAACAGTATATTG
ATTTCGTAAACTATTGTTATGATTGGAAAAGCGGAGCCCTGAAATAATATTTTTTCTTGC
CAAAAAAAAAAAAAAAAAAAAAA

Homology of Contig U35_1452 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	Description
Rice v7	LOC_Os02g26650.3	389	protein\|delta14-sterol reductase, putative, expressed
Brachypodium v1_2	Bradi3g43120.2	454
Arabidopsis v10	AT1G50430.1	432	\| Symbols: DWF5, PA, LE, ST7R, 7RED \| Ergosterol biosynthesis ERG4/ERG24 family \| chr1:18682175-18685555 REVERSE LENGTH=432