barSeed - Barley Seed Development Database

Probe CUST_7691_PI390587928

Source Contig U35_1455

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_7691_PI390587928	Hv_44K_v2	TTGGTCCACGTGATATTTCAACCATCGATGCCTCCAAAAGTGGTGTTTAAACAAAAACTA	2091	GeneList: blue MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.571	1.560	0.945	0.970	0.480	0.582
Raw	216.138	333.253	177.510	292.923	50.543	65.884

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
Harvest21	ABC04992	2151	3e-25	2092 - 2151	100	60 / 60	plus	ABC04992
Harvest35	U35_1455	2151	3e-25	2092 - 2151	100	60 / 60	plus

Contig Sequence (2151 bp)

>U35_1455 2151 Hv_44K_v2
GTCACTCGTCCCTTCCTTCAGATGGCGATGGCGATGCGACGCGCGGCGGCGCTCGGCGCC
CGCCACATCCTAGCCGCCTCCGGCTCCGCCTCCTCCCGCGTCGCCAGCCGCCGCCACATG
GGCAGCGTGGACGCGGGCGCGGCGATGGAGAAGATCCGGGCGGCGGGGCTGCTCAGGACG
CGCGGCCTCATCGGCGGCAAGTGGGTCGACGCCTACGACGGGAAGACCATCGAGGTGCAA
AATCCAGCAACTGGCGAGGTCCTTGCAAATGTAGCCTGCATGGGCAACAGAGAAACAGCT
GATGCAATAGCTTCTGCTCACACTACATTTTATACTTGGAGCAAACTCACTGCAAGTGAA
AGGAGCAAGGCACTAAGAAAATGGCATGACCTACTTATGTCACACAAGGAAGAACTTGCG
CTTCTTATGACACTGGAACAGGGGAAGCCTATGAAAGAAGCCCTTGGGGAGGTGAACTAT
GGTGCAAGTTTCATAGAATTTTTTGCTGAGGAAGCAAAGCGTGTGTATGGTGATATTATT
CCCCCAACTCTAGCTGATCGCAGACTATTGGTTCTGAAGCAGCCTATTGGGGTAGTTGGA
GCTATTACACCATGGAATTTTCCTTTAGCAATGATAACCAGAAAGGTTGGACCAGCATTG
GCTTGTGGATGCACAGTTGTTGTCAAGCCATCAGAGTTCACACCTCTGACAGCATTAGCT
GCAGCAGACCTTGCTCTTCAAGCTGGAATACCAGCTGGTGTACTAAATGTTGTGATGGGT
AATGCTCCTGAGATAGGTGATGAACTAATGCAGAGCACACAGGTCAGAAAGATTACGTTC
ACGGGTTCAACAGCTGTTGGCAAAAAACTGATGGCTGGATCAGCAAACACCGTGAAAAAG
GTTTCTTTGGAGCTTGGTGGGAATGCACCTTGCATTGTTTTCGATGATGCAGATATTGAT
GTTGCCGTTAAAGGCAGTCTTGCTGCCAAGTTTCGGAACAGTGGACAGACATGTGTATGT
GCAAACAGGATATTGGTGCAAGAAGGTATCTACGAAAAATTCGCAAGTGCATTTGTCAAG
GCTGTTCAGAGCTTGCAAGTCGGTAATGGGCTAGAAGAGAGTACATCACAGGGTCCTCTA
ATCAATGAAGCTGCCGTTCAAAAGGTAGAGAAGTTTGTAGGTGATGCTACTTCAAAGGGA
GCCAACGTCATGCTCGGTGGTAAAAGACACAGCCTCGGGATGACCTTTTATGAGCCAACT
GTGGTAGGGAACGTAAGCAATGATATGCTTCTTTTCAGGGAAGAAGTTTTTGGTCCAGTT
GCACCACTTATACCATTCAAAACTGAGGAGGAAGCAATCCATCTAGCAAACGACACCAAT
GCAGGCTTAGCTGCATACATGTTTACAAAGAGCATAGCCCGGTCATGGCGTGTTTCCGAA
GCTCTTGAGTACGGGCTTGTCGGTGTGAATGAGGGATTGATTTCCACAGAGGTGGCGCCA
TTCGGTGGGGTTAAGCAGTCTGGCCTTGGGCGGGAAGGATCAAAATATGGCATGGATGAC
TTCCTGGAGATTAAGTATGTATGCATGGGCAACCTGGGTTGATGCTTGAAGTTGGCCTTC
GCTTCCACCTGAATGAAGAAGGATCGAGAACCTACCGGGGCCAAGTACGCTGATAAGCGC
GGATAGCTCTGCAGGCGTAAGGTGTAAGATGGAACGAAGAGGGAGGACAGTTTTAGAAGC
TTGGAATAAAGGGAGTAGGCCGTGTCCTAATAAAAGGTATAAGTTCGAGTGAAGAGGGAA
CACAGTTTAGAAGCTTGGAATAAAGAGAATAGGCCGTGTCCGAATAAACGGGTTGTAATG
AGTTGTAAATGAATGAAACGTGAAGCACGGCTTCGTCTCTGAACTTTGGTACTCTCCTAC
TAATAATCATCACGTCGTTCACTTGGTGCAGAGAGCAGGTCCTCTCAGATGGTTATATAG
TGATGCTGCATTCTGTGTTTCTGGCGACTGTTGTTCCTGGAAGTCAGTTGTACCCCTGTA
TCACCAAAGTGTAACAGATCATGAGTAGCGTATATATCCTGCAAGTAGCAGTTGGTCCAC
GTGATATTTCAACCATCGATGCCTCCAAAAGTGGTGTTTAAACAAAAACTA

Homology of Contig U35_1455 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	Description
Rice v7	LOC_Os02g07760.1	528	protein\|aldehyde dehydrogenase, putative, expressed
Brachypodium v1_2	Bradi3g05490.1	530
Arabidopsis v10	AT1G79440.1	528	\| Symbols: ALDH5F1, SSADH1, SSADH \| aldehyde dehydrogenase 5F1 \| chr1:29882525-29887275 REVERSE LENGTH=528