- Probe CUST_7688_PI390587928
- Source Contig U35_1458
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_7688_PI390587928 | Hv_44K_v2 | TGGCTGCAAGAAGCTTGTCTTCTCATCATCAGCCACCGTCTACGGGTGGCCCAAGGAAGT | 541 | GeneList: None MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 1.378 | 1.802 | 0.999 | 0.646 | 0.963 | 0.858 |
| Raw | 10.183 | 20.155 | 9.643 | 8.359 | 3.199 | 3.170 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | AK252360.1 | 1584 | 2e-24 | 559 - 618 | 100 | 60 / 60 | plus | ABC36805 ABC45578 ABC49724 |
| MLOC | MLOC_70713.1 | 1136 | 7e-23 | 213 - 272 | 98 | 59 / 60 | plus | ABC36805 ABC45578 |
| JLOC1 | JLOC1_46940.1 | 1318 | 4e-23 | 280 - 339 | 98 | 59 / 60 | plus | |
| Harvest21 | ABC32278 | 624 | 3e-25 | 539 - 598 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC04165 | 610 | 3e-25 | 534 - 593 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC04163 | 1602 | 3e-25 | 551 - 610 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC04162 | 652 | 3e-25 | 527 - 586 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_1460 | 615 | 3e-25 | 539 - 598 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_1459 | 1594 | 3e-25 | 551 - 610 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_1458 | 667 | 3e-25 | 542 - 601 | 100 | 60 / 60 | plus |
Contig Sequence (667 bp)
>U35_1458 667 Hv_44K_v2 GGTCCAACAGAGGAAGAAAGAAACCGCGAGAGAAACAAGGAAGGAAGAAACAACCCAACT TCCCCTTCCTCCATCCATCCATCCATAAAACCCAAGGAAAGAAATCCATCCCATTACAAT CCCCTCCCGAATCAGAAGAAGAAGAAGGAAGAAGGAAGAAGGAAGAAGGAAGGAAGATGG TTTCTGCTGTTCTTCGTACGATCCTGGTGACGGGCGGCGCGGGGTACATCGGGAGCCACA CGGTGCTGCAGCTGCTCCTCCAGGGCTTCCGCGTCGTCGTCGTCGACAGCCTCGACAACG CGTCCGAGGAGGCCATCCGCCGCGTGCGACAACTCGCAAACAACACCAACCTCCTAGAAT TCCGCAAGGTGGACCTCCGTGACAAGGCGGCGCTTGAAGATATCTTCTCCTCCCAGAGGT TCGAGGCTGTGATCCACTTTGCGGGTCTGAAAGCCGTCGGGGAGAGCGTGGAGAAGCCCC TGCTTTACTACGACAACAACCTCATCGGCACAATCACCCTCCTCCAAGTCATGGCAGCAC ATGGCTGCAAGAAGCTTGTCTTCTCATCATCAGCCACCGTCTACGGGTGGCCCAAGGAAG TGCCCTGCACCGAGGAGTTCCCGCTCTCCGCGACCAACCCGTACGGCCGAACAAAGCTTG TCATTGA
Homology of Contig U35_1458 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | LOC_Os05g51670.2 | 325 | 5e-91 | protein|NAD dependent epimerase/dehydratase family protein, putative, expressed |
| Brachypodium v1_2 | Bradi2g14250.4 | 271 | 4e-95 | |
| Arabidopsis v10 | AT4G10960.1 | 351 | 1e-75 | | Symbols: UGE5 | UDP-D-glucose/UDP-D-galactose 4-epimerase 5 | chr4:6716083-6718472 REVERSE LENGTH=351 |