barSeed - Barley Seed Development Database

Probe CUST_7687_PI390587928

Source Contig U35_1459

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_7687_PI390587928	Hv_44K_v2	GGTTCCCTTGCCTTGTAGAAATATATATATTCTGTCGGTCATGGAATAACTTACTACTTA	1480	GeneList: orangered4 MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	3.506	3.690	1.305	0.749	0.326	0.301
Raw	1299.443	2270.364	645.211	595.776	89.305	92.302

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK252360.1	1584	2e-24	1489 - 1548	100	60 / 60	plus	ABC36805 ABC45578 ABC49724
JLOC1	JLOC1_46940.1	1318	8e-25	1211 - 1270	100	60 / 60	plus
Harvest21	ABC45578	550	3e-25	56 - 115	100	60 / 60	minus	ABC45578
Harvest21	ABC04163	1602	3e-25	1481 - 1540	100	60 / 60	plus
Harvest21	ABC04166	661	2e-22	23 - 84	97	60 / 62	minus
Harvest35	U35_1459	1594	3e-25	1481 - 1540	100	60 / 60	plus
Harvest35	U35_1461	661	2e-22	578 - 639	97	60 / 62	plus

Contig Sequence (1594 bp)

>U35_1459 1594 Hv_44K_v2
GGTCCAACAGAGGAAGAAAGAAACCGCGAGAGAAACAAGGAAGGAAGAAACAACCCAACT
TCCCCTTCCTCCATCCATCCATCCATCCATCCATAAAACCCAAGGAAAGAAATCCATCCC
ATTACAATCCCCTCCCTCACCGTCGACTCTTCTCGAATCAGAAGAAGAAGGAAGAAGGAA
GGAAGATGGTTTCTGCTGTTCTTCGTACGATCCTGGTGACCGGCGGCGCGGGGTACATCG
GGAGCCACACGGTGCTGCAGCTGCTCCTCCAGGGCTTCCGCGTCGTCGTCGTCGACAGCC
TCGACAACGCGTCCGAGGAGGCAATCCGCCGCGTGCGACAACTCGCAAACAACACCAACC
TCCTAGAATTCCGCAAGGTGGACCTCCGTGACAAGGCGGCGCTTGAAGATATCTTCTCCT
CCCAGAGGTTCGAGGCTGTGATCCACTTTGCGGGTCTGAAAGCCGTCGGGGAGAGCGTGG
AGAAGCCGCTGCTTTACTACGACAACAACCTCATCGGCACAATCACCCTCCTCCAAGTCA
TGGCAGCACATGGCTGCAAGAAGCTTGTCTTCTCATCATCAGCCACCGTCTACGGGTGGC
CCAAGGAAGTGCCCTGCACCGAGGAGTTCCCGCTCTCCGCGACCAACCCGTACGGCCGAA
CAAAGCTTGTCATTGAAGACATCTGCCGTGACCTCCAGCGCTCGGACCCCGACTGGAAGA
TCATACTGCTGAGGTACTTCAACCCAGTTGGCGCTCACCCGAGTGGCTACATCGGGGAAG
ACCCCCTTGGAGTCCCCAACAACCTGATGCCCTATGTCCAGCAAGTCGCTGTCGGGAGGC
GGCCTGCGCTGACGGTTTACGGGACCGACTACAACACCAAGGATGGAACAGGGGTACGTG
ACTACATCCATGTTGTTGACCTGGCTGACGGCCACATCGCAGCCTTGAGGAAGCTCTACG
AAGATTCTGACAGAATAGGGTGCGAAGTGTACAATCTGGGCACTGGAAAGGGAACGTCCG
TGCTGGAGATGGTTGCCGCATTCGAGAAGGCTTGCGGAAAGAAAATCCCTCTGGTTTATG
CTGGAAGAAGAGCTGGAGATGCCGAGACTGTGTACGCTGCCACTGCCAAAGCAGAGAAGG
AGCTCAAGTGGAAGGCCAAGTTTGGGGTGGAGGAGATGTGCAGAGACCTGTGGAACTGGG
CAAGCAAGAACCCCTACGGCTACGGATCCAGCGACAACGGCCACTGATCCAGCGACAGAG
CCAGTAGCAGTAGAGCATACACCACCATCTCATCCATCTATATATATATGTTTGTCCACC
ACCACAGAGACAATGAAGGAGGAAGAAGAAGAGTACTGATGTGTATAGGGAGTGAGTCGG
ATGATCCATCAGCAGCAGCTTGATTAATAGTATAATATATTGTTCGTCTTAGAAAACTAA
TCATATCGTATCTCCCTTATGGAGTAGAAGAAATAAGGTTGGTTCCCTTGCCTTGTAGAA
ATATATATATTCTGTCGGTCATGGAATAACTTACTACTTATACTGATATAAATATATATA
TATATATGGTTGGTTCAAAAAAAAAAAAAAAAAA

Homology of Contig U35_1459 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	Description
Rice v7	LOC_Os05g51670.1	355	protein\|NAD dependent epimerase/dehydratase family protein, putative, expressed
Brachypodium v1_2	Bradi2g14250.1	353
Arabidopsis v10	AT4G23920.1	350	\| Symbols: UGE2, ATUGE2 \| UDP-D-glucose/UDP-D-galactose 4-epimerase 2 \| chr4:12431416-12433666 FORWARD LENGTH=350