barSeed - Barley Seed Development Database

Probe CUST_7686_PI390587928

Source Contig U35_1460

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_7686_PI390587928	Hv_44K_v2	TGGCTGCAAGAAGCTTGTCTTCTCATCATCAGCCACCGTCTACGGGTGGCCCAAGGAAGT	538	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK252360.1	1584	2e-24	559 - 618	100	60 / 60	plus	ABC36805 ABC45578 ABC49724
MLOC	MLOC_70713.1	1136	7e-23	213 - 272	98	59 / 60	plus	ABC36805 ABC45578
JLOC1	JLOC1_46940.1	1318	4e-23	280 - 339	98	59 / 60	plus
Harvest21	ABC32278	624	3e-25	539 - 598	100	60 / 60	plus
Harvest21	ABC04165	610	3e-25	534 - 593	100	60 / 60	plus
Harvest21	ABC04163	1602	3e-25	551 - 610	100	60 / 60	plus
Harvest21	ABC04162	652	3e-25	527 - 586	100	60 / 60	plus
Harvest35	U35_1460	615	3e-25	539 - 598	100	60 / 60	plus
Harvest35	U35_1459	1594	3e-25	551 - 610	100	60 / 60	plus
Harvest35	U35_1458	667	3e-25	542 - 601	100	60 / 60	plus

Contig Sequence (615 bp)

>U35_1460 615 Hv_44K_v2
GGAAGAAAGAAACCGCGAGAGAAACAAGGAAGGAAGAAACAACCCAACTTCCCCTTCCTC
CATCCATCCATCCATCCATCCATCCATAAAACCCAAGGAAAGAAATCCATCCATCCCATT
ACAATCCCCTCCCGAATCAGAAGAAGAAGAAGAGGAAGAAGGAAGGAAGGAAGATGGTTT
CTGCTGTTCTTCGTACGATCCTGGTGACGGGCGGCGCGGGGTACATCGGGAGCCACACGG
TGCTGCAGCTGCTCCTCCAGGGCTTCCGCGTCGTCGTCGTCGACAGCCTCGACAACGCGT
CCGAGGAGGCCATCCGCCGCGTGCGACAACTCGCAAACAACACCAACCTCCTAGAATTCC
GCAAGGTGGACCTCCGTGACAAGGCGGCGCTTGAAGATATCTTCTCCTCCCAGAGGTTCG
AGGCTGTGATCCACTTTGCGGGTCTGAAAGCCGTCGGGGAGAGCGTGGAGAAGCCGCTGC
TTTACTACGACAACAACCTCATCGGCACAATCACCCTCCTCCAAGTCATGGCAGCACATG
GCTGCAAGAAGCTTGTCTTCTCATCATCAGCCACCGTCTACGGGTGGCCCAAGGAAGTGC
CCTGCACCGAGGAGT

Homology of Contig U35_1460 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os05g51670.2	325	1e-81	protein\|NAD dependent epimerase/dehydratase family protein, putative, expressed
Brachypodium v1_2	Bradi2g14250.4	271	8e-84
Arabidopsis v10	AT4G23920.1	350	1e-65	\| Symbols: UGE2, ATUGE2 \| UDP-D-glucose/UDP-D-galactose 4-epimerase 2 \| chr4:12431416-12433666 FORWARD LENGTH=350