barSeed - Barley Seed Development Database

Probe CUST_7685_PI390587928

Source Contig U35_1461

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_7685_PI390587928	Hv_44K_v2	GGTTCCCTTGCCTTGTAGAAATATATATATATTCTGTCGGTCATGGAATAACTTACTACT	577	GeneList: yellow MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	3.508	3.578	1.286	0.756	0.340	0.297
Raw	1235.416	2056.544	604.162	570.153	87.775	86.618

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
JLOC1	JLOC1_46940.1	1318	6e-21	1211 - 1268	97	58 / 60	plus
Harvest21	ABC04166	661	3e-25	25 - 84	100	60 / 60	minus
Harvest21	ABC45578	550	2e-21	58 - 115	97	58 / 60	minus	ABC45578
Harvest21	ABC04163	1602	2e-21	1481 - 1538	97	58 / 60	plus
Harvest35	U35_1461	661	3e-25	578 - 637	100	60 / 60	plus
Harvest35	U35_1459	1594	2e-21	1481 - 1538	97	58 / 60	plus

Contig Sequence (661 bp)

>U35_1461 661 Hv_44K_v2
CGTGACTACATCCATGTTGTTGACCTGGCTGACGGCCACATCGCAGCCTTGAGGAAGCTC
TACGAAGATTCTGACAGAATAGGGTGCGAAGTGTACAATCTGGGCACTGGAAAGGGAACG
TCCGTGCTGGAGATGGTTGCCGCATTCGAGAAGGCTTGCGGAAAGAAAATCCCTCTGGTT
TATGCTGGAAGAAGAGCTGGAGATGCCGAGACTGTGTACGCTGCCACTGCCAAAGCAGAG
AAGGAGCTCAAGTGGAAGGCCAAGTTTGGGGTGGAGGAGATGTGCAGAGACCTGTGGAAC
TGGGCAAGCAAGAACCCCTACGGCTACGGATCCAGCGACAACGGCCACTGATCCAGCGAC
GGAGCCAGTAGCAGTAGAGCATACACCACCATCATCCATCTATATATATGTTTATCCACC
ACCACAGAGACAATGAAGGAGGAAGAAGAAGAGTACTGATGTGTATAGGGAGTGAGTCGG
ATGATCCATCAGCAGCAGCTTGATTAATATAATATATTGTTCGTCTTAGAAAACTAATCA
TATCGTATCTCCCTTATGGAGTAGAAGAAATAAGGTTGGTTCCCTTGCCTTGTAGAAATA
TATATATATTCTGTCGGTCATGGAATAACTTACTACTTATACTATATACATATATATATA
T

Homology of Contig U35_1461 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os05g51670.3	292	7e-53	protein\|NAD dependent epimerase/dehydratase family protein, putative, expressed
Brachypodium v1_2	Bradi2g14250.1	353	2e-52
Arabidopsis v10	None