barSeed - Barley Seed Development Database

Probe CUST_7684_PI390587928

Source Contig U35_1462

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_7684_PI390587928	Hv_44K_v2	CAAAGAACATCACTGTTTGTGAGCCTGAATTTGCTAGATATCCAGTGGACTGAACTCAAA	1479	GeneList: royalblue MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	9.529	7.690	1.524	0.532	0.741	0.660
Raw	89.954	121.014	19.659	10.154	3.083	3.634

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_69891.2	1722	2e-23	1542 - 1599	100	58 / 58	plus	ABC05702 ABC43027
JLOC1	JLOC1_46343.1	1778	1e-23	1528 - 1585	100	58 / 58	plus
Harvest35	U35_1462	1555	3e-25	1480 - 1539	100	60 / 60	plus

Contig Sequence (1555 bp)

>U35_1462 1555 Hv_44K_v2
ACTGGATAGCCATAGACACTGCCGTAGCTGCGGCTGCGCGCGCTTGTGTGGCCGAGAGAG
CAGCGCTGGTGGGTAGACTGTACGGCGAGCAAGCCGGCCTTGTTGGCCTCACCCCCACGT
CGGTGTCGGCCACCCTGCCGCCGTCGGCTCCTCCTCCTCCGGCGGCCACCAAGGGCACGC
CCCGCCGGGCGCCATGGAATGCTGCGCTGATGGCCGCCTCGTCGACGGCTGCATTGCTGG
CCGTGACGCCGGCCGCGCACGCCGCGGCGTTCTCCAAGGAGGAAGTCGCCGGGTCGTTCA
CCAAGGTGGTGGACACGGTGGATGTGGTGATCGGCGTCGGCGGCCAGGTGGCCGAGCAGT
CCTTTGTCGTGCTCAGGGCGCTAGGCGAGGCCGCGAAGCCGGCGCTGCCGGTTCTGCAGA
GCGCCGGTGAGCAGGCCCTGAAGCTCGCCTCCCCGGTGGTCTCTGACGCCTCCAGGCAGG
CCACGGAGGCGCTCCAGGGCGCCGGCGTCGACCTTGCCCCCCTCCAGTCTGCTTTTAAGA
CGTTCGCAGATGCGGCGCAGCCGGCCATCGGCGCCGCGAAGCCGATCGCCTCCGAGACCG
TCCAGACCATCGGGTCTCTGGAAGGCACGGACTATGTCGTGGCCGCCGGAGCCGCGTTCC
TCGCGTACCTGCTCCTTCCGCCGGCCTGGTCCCTGCTCTCATACGGCCTACGCGGCTACA
AAGGTGACCTGAACCCAGCTCAAGCTCTGGACATGGTCACCTCTCAAGGTTACCTTATCA
TCGACGTGCGAAGCGAGAACGACAAGGGCAAAGCCGGCGTGCCGCAGCTCCCCTCCAACG
CAAAGAACAAGATCATCTCTCTGCCACTGGAAGAACTTCCGAACAAGATAAAGGGCATGG
TGCGCAACGCGAAGCGAGCAGAGGCGGAGATCGCCGCGCTGAAGATCTCGTACCTCAAGA
GGATCGGCAAGGGCTCCAACATCGTCGTCATGGACTCGTACGGTGACAACTCAAAGATTG
TGGCCAAGACACTCAACAGCGTGGGGTTCAAGAACTGCTGGGTCATGGCCGGCGGATTCT
CCGGCCGGAAAGGGTGGGCGCAGAGCCGCCTTGGGACGGATTCCTACAACCTTTCCGTTG
TAGAAGTCATCAAGCCGTCGCGGGTGATTCCGGCGGCCGCTGAAAGGTTCGTGACGGTGT
CGTCGACTTCGACTCCCTCCAGGACGACTCGCAAGCTTCTCCCTGGCAGTGTGGACAACT
GAAAAAATGATCTGAACTCTGAAGAAATGCAGAATCATTTCACTGAATTTCCAACTCTTG
TTCTGTAACTTGTACGATGTTAGTGCTGCAAACTGCTTATCAAGCATCCTCAGAAGAAAA
CGCCGCAAATACCTGGGGCACATAGCAATCTGTGCAAAATTAGATAATGGGTTTAGAGCT
ATGAGGTTTAGTTGCTGGAAGGAGTCAAAGAAGTTGTCACAAAGAACATCACTGTTTGTG
AGCCTGAATTTGCTAGATATCCAGTGGACTGAACTCAAAAAAAAAAAAAAAAAAA

Homology of Contig U35_1462 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os02g49680.1	388	2e-148	protein\|arsenate reductase, putative, expressed
Brachypodium v1_2	Bradi3g56190.1	391	5e-149
Arabidopsis v10	AT5G23060.1	387	5e-101	\| Symbols: CaS \| calcium sensing receptor \| chr5:7736760-7738412 REVERSE LENGTH=387