barSeed - Barley Seed Development Database

Probe CUST_7679_PI390587928

Source Contig U35_1467

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_7679_PI390587928	Hv_44K_v2	TGTACGGTTGAACCGATTGCAGTTAAACACGAGCAATAAATTTGACACCGTTCTAAAAAA	3889	GeneList: lightsteelblue1 MasterList: Hydrolysis_Function_Probe_Module

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	7.410	3.007	1.091	0.859	0.411	0.477
Raw	1346.885	902.563	278.614	346.351	58.491	74.473

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
JLOC1	JLOC1_39624.2	3105	5e-22	2896 - 2950	100	55 / 55	plus
JLOC1	JLOC1_39624.1	2606	5e-22	2397 - 2451	100	55 / 55	plus
Harvest21	ABC08591	2007	3e-25	1937 - 1996	100	60 / 60	plus	ABC08591
Harvest35	U35_1467	3960	3e-25	3890 - 3949	100	60 / 60	plus

Contig Sequence (3960 bp)

>U35_1467 3960 Hv_44K_v2
GGTACCATCGGAATCGCCATCGCCGACGCCGTGCGTGCGATAAAGCACCGGCTGCCCGGC
TCCATTCCCTCGCCGCGCCGTCCGTCCGTCCAAGAACTGAAGATGAACTGCCCCTCCTCC
TCCTCCTCCTGCTGCGGCGTCTCTCCTCCGGTCCTCGCCAGCCCTCGGGGGGAATTCGCT
GCTGGTTGCTCCACAAGAACAACCCAGAAGGCGCATTTCCTCGGTTCAAGGCAATCCTCT
CAGCTGATCTACAGCCCAACATCATCGCGGTTGTCGAGGAGAGCTGTAATCGCCTTGGCC
GGAAAGCAGTCTTGGGATATCGGCAGGTTCGCCAAGACTCTATTTTTCTTCAACGGGCCT
CCGAATCCTCTCAAGATTGTGGAGTCCATAATGAGCAGCATCACAGCCTCTGCTCCCACC
GAGGCGCCGAAGAAAGCAGAGACTTCTGATGTGGTGCTTGTCACTGGAGCCACCGGCGGT
GTCGGACGGAGAGTCGTCGATGTCCTGCGGAAGAAGGGGGTGCCTGTCCGAGTATTGGTT
AGAAATGCAGAGAAGGCGAGGACAATGTTGGGGCCAGATGTGGACTTGATTATAGGCGAT
GTTACAAAGGGAGACACACTCGATCCTAAGTACTTCAAAGGGATCAAGAAAGTAATCAAT
GCAGTTTCAGTCATAGTAGGTCCAAAGGAAGGTGATACACCGGACAGGCAGAAGTATTCA
CAAGGCATCAAGTTTTTTGAACCCGAGATCAAAGGACCTTCACCTGAAATGGTAGAGTAC
CTTGGTATGCAAAACTTGATTAATGCTGTAAAGGAAAGTGTTGGGCTGAGCGAAGGGAAA
CTGCTATTTGGATTCAAAGGCAATTTATGTGGAAAGTTTGTGTGGGGAGCACTTGACGAT
GTTGTAATGGGCGGTGTTAGTGAAAGTGCATTCCAAATCCAACCAACAGGAAGTGAAACT
GGTGAAGCAACTGGATTGTTCAAAGGCATCGTGTCTACTTCAAATAACGGTGGCTTCACT
AGTATAAGGACAAAGAATTTTACCGTGCCCGAGGACCTGTCGGCATACGATGGTGTTGAA
CTACGAGTTCAGGGTGATGGCCGTCGGTACAAACTTATCATAAGAACTAGCTACGAATGG
GATACTATTGGCTATACCGCTAGCTTTGACACCATGAAGGGAGAATGGCAAAGCATTAGA
ATACCTTTCTCTTCGCTGATACCTGTATTTCGCGCCCGTACCGCAACTGATGCTCCGCCC
TTTGATGCAAGCAATATCACTGCATTACAGCTCATGTTCAGCAAGTTTGAATATGACGGA
AAACTCAATCCAACATTTGCAGAAGGTCAATTCGAGCTCCCTTTTTCAAGTATCAGAGCA
TACATAAGTGAGCCAATTACTCCAAGGTTCATTCATGTGAGCTCTGCAGGAGTTACAAGA
CCTGAAAGACCAGGGCTAGATCTAAGCAAACAACCCCCCGCCGTCCGCATGAACAAAGAG
CTTGGTTCCATTCTAACTTACAAGTTGAAGGGAGAGGATTTAATCCGGGAAAGCGGTGTT
CCCTACAGCATCGTGCGGCCATGTGCTCTAACCGAGGAACCAGCTGGAGCTGACCTCATA
TTTGAACAGGGAGATAATATCACTGGAAAGATATCACGGGAAGAAGTTGCCCGCATTTGT
ATCGCGGCTCTCGCAAGCCCAAGTGCAGTGGGGAAGACTTTTGAGGTCAAGAGTACCGTT
CCATTTAGTGAACCGTTTGTGATCGATCCTTCAAACCCACCTCCTGAGAAGGACTACGAA
GTGTACTTCAAGGAGCTCAAAGACGGCATCACGGGTAAAGAGGCCCTTGAAGGAACACCT
GCTCTAGTCTGACGATTACGTCGAATGCAGAATGCCCTCTGCTTCGAGAAATCCCGACAG
GCAATGGATATCTAAATAAGAGAGGGGAGATTGTATGCAGAAGTGCGAAGGAAAGTGCAC
GCGTTGGATAGCGTAGTATTGGATGAACCGCTGGCGGTTATATTTCCTGAGTTTCCATTA
TGCTTTATGTTCAGTATATACAAAAGAAATGTAAAACTTCAGAGGACTGTAGAGCTAGGC
TATGGATTTTCATAGAGCAGCTTTCTGATGCTGTAGTATTGGTAATTTGTCTAGGTAGAC
CATTTTGGTAATGTGAAGTGAGAATCATCAGTGCGTAGAAAAAGGAGGTTTAGGGTCGTG
CAAGTTGCTTGATGTGTTCATACAACCAGGTAAATGGTGTGCCAGCATGTGCCCGTAAAG
ATCTGCTGCAGAAGATTAGGGATGAATGGGGATTTAAAGGGTACATCGTATCTGATTGTG
ATGCAGTGGCAATAATCCACGAAAACCAGACATACACGAGTTCAGATGAAGATTCAGTAG
CGATTGTTCTCAAGGCCGGAATGGATGTCAACTGTGGGTCTTTCCTGATTCGGCATACAA
AGTCGGCAATTGAAAAAGGAAAGATACAAGAAGAAGATATCAACCATGCTCTTTATAATC
TGTTTTCTGTTCAGCTACGCCTTGGACTTTTTGAGAAAGCCAATGAGAATCAATGGTTCA
CTCGACTAGGCCCCAGCAATGTTTGCACGAAAGAGCACAGGGAGCTCGCAGCAGAAGCTG
TAAGGCAGGGTACCGTCTTGTTGAAGAACGATAACAGTTTTTTGCCTCTAAAGAGAAGCA
AAGTTAGTCATATTGCTCTCATTGGAGCGGCAGCAAACGATGCATACATAATGGGGGGAG
ATTACACAGGCGTTCCATGTGACCCTATCACCTTTCTTAAAGGCATGCAAGCCTTTGTTC
CGCAAACGACCGTTGCTGCTGGTTGCAAAGATGTATCTTGTGACTCACCGGATGGATTTG
GCGAAGCCATTGAAGCAGCTAAAAGAGCTGATATTGTTGTTGTGATTGCCGGGTTGAACC
TGACTCAGGAGAGCGAAGATCTTGATAGAGTGACCCTTCTCCTTCCAGGCAGGCAGCAGG
ATCTTGTGAATATCATTGCCAGTGTAACAAAGAAGCCTATTGTGTTGGTTATCACTGGCG
GCGGTCCTGTCGATGTTGCTTTTGCGAAGCAAGATCCAAGAATTGCAAGTGTCCTGTGGA
TTGGATATCCAGGGGAAGTTGGTGGACAAGTTCTTCCAGAAATTCTTTTCGGAGAGTACA
ATCCAGGAGGAAAATTGCCCATGACTTGGTACCCCGAATCCTTCACCGCGGTTCCAATGA
ATGATATGAACATGAGAGCCGACCCTTCACGCGGCTACCCTGGAAGAACATATCGGTTTT
ACACCGGAGAAGTTGTGTATGGTTTTGGATACGGTCTGAGCTACTCGAAGTACTCATACA
ACATCGTACAAGCTCCACAGAGAATTAGCCTGTCACATTCACCGGTACCAGGCCTCATCA
GTAGGAAGCCTGCATACACACGGAGGGACGGATTGGACTGTGTCCAAGTTGAAGACATCG
CATCATGTGAGTCCCTGGTATTTTCTGTCCACATCTCGGTCGCCAACGACGGTGCCATGG
ACGGGAGCCATGCCGTCTTACTGTTCGCAAGATCGAAGTCGAGCGTTCCGGGCTTCCCTC
TGAAACAGCTGGTTGGTTTCGAGCGCGTCTACACTGCCGCCGGCAGTTCAAAAAATGTGG
CGATCACGGTGGATCCCTGCAAATATATGAGCGCGGCCAACACCGAGGGCAGAAGGGTGC
TGCTCCTGGGATCCCATCATCTCATGGTAGGAGACGAAGTGCACGAGTTTGTCATCGAAG
CATAACGAGCTGCATAGTGTGTCACTTCTATAGCTGCTGTATTGGGAACAGTCGGATTTA
CAAATGTACAGATGTATCAAAGTCATGTTGTAAAGATTCATTGGATGCATGTACGGTTGA
ACCGATTGCAGTTAAACACGAGCAATAAATTTGACACCGTTCTAAAAAAAAAAAAAAAAA

Homology of Contig U35_1467 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	Description
Rice v7	LOC_Os02g13970.2	588	protein\|Complex I intermediate-associated protein 30 domain containing protein, putative, expressed
Brachypodium v1_2	Bradi3g09010.2	594
Arabidopsis v10	AT4G18810.2	627	NAD(P)-binding Rossmann-fold superfamily protein \| chr4:10322263-10325735 REVERSE LENGTH=627