barSeed - Barley Seed Development Database

Probe CUST_7667_PI390587928

Source Contig U35_1373

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_7667_PI390587928	Hv_44K_v2	CTGGCTGTATTAAAGCAACTCGCGTTTGCTACAATTGATTGAACTTTTTTCAGTCTAAAA	855	GeneList: red MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.264	1.586	1.214	0.902	0.372	0.327
Raw	966.638	1870.822	1268.606	1443.817	214.642	203.831

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_59203.1	579	7e-23	487 - 543	100	57 / 57	plus	ABC04659
JLOC1	JLOC1_38515.1	1492	4e-23	1343 - 1399	100	57 / 57	plus
Harvest21	ABC04659	2606	3e-25	2534 - 2593	100	60 / 60	plus	ABC04659
Harvest35	U35_1373	928	3e-25	856 - 915	100	60 / 60	plus

Contig Sequence (928 bp)

>U35_1373 928 Hv_44K_v2
GGTTTTTGAACGCCCAGAAGCAACAATTTTGGGCTGTCACGTGGAAGGAGATGGCATTGA
TATGTTGCAGCCACATTTATCTGTTGAAATTAGATCAGCTGTTGACCCTTCTAGAATAGA
ATCTGTGGTTCCTGTTCCTCCTTCCTACCACGTTGAAGTAAGAAATTTACCCGAAGGAAA
GCATTTTGTTCAGCTTCGGTCTGGCCTTCCATCACATACCAATATATTTGAATCGGAGTT
GGTTGAAGTTGACCTAGAAGAGCAACCTCAGATTCATGTTGGTCCTCTTAAATATAAAAC
TGAAGAGCGGCATCACAAACAGGAACTGACCCCAGCCCCAGTTTTACCTCTTATTGTTGG
AGTTTCTGTTGTTACAGTCGTGATCAGTATGCCAAGGTTGAAGGACTTGTACCAGAGCGC
TGTAGGAATGACTTCCCTAAGTTCAGGAAACACACCGAGCAGAAAGGAACCACGGAAGAC
AATATTGAGAAAGAGAGCCTGAAACATATGATCCTGATTAGGCGTGGAAAATTGAACTTA
CAGGTTGAGTACGTCAGTATTAGAAAGTAGCTGTTACTTCCCAATGTAATTTTGCAGATG
ACGAAGCTAACAGTTAATATTTTGTACCATTGTTGACTAATATTTTGTACCAATTGAGTA
CAAATTTGGTCGCATTGTTCATTGAGAAAAAAAAAAAATGGGAGTATTGTACTATAATTT
TGAGAGCCTGGCGTTTGATTTCTGGTATCCAGAGGGACTGTAGTGTCATTGTTGACAGTT
CTAGAAATACTTCGATACCAGCGGCTGTTTGTTTCGTTTCGTTTCGTGGGCATCAGAGAA
CATAAATATGTACTACTGGCTGTATTAAAGCAACTCGCGTTTGCTACAATTGATTGAACT
TTTTTCAGTCTAAAAAAAAAAAAAAAAA

Homology of Contig U35_1373 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os01g19470.1	1194	1e-71	protein\|nodal modulator 1 precursor, putative, expressed
Brachypodium v1_2	Bradi2g11490.1	1204	5e-76
Arabidopsis v10	None