barSeed - Barley Seed Development Database

Probe CUST_7666_PI390587928

Source Contig U35_1374

barSeed

Links

Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_7666_PI390587928	Hv_44K_v2	ATATGATATCATGATGCTATAGGTTGAAGGACTTGTACCAGAGCGCTGTAGGAATGACTT	2452	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_59203.1	579	2e-24	6 - 65	100	60 / 60	plus	ABC04659
Harvest21	ABC51226	592	3e-25	413 - 472	100	60 / 60	plus
Harvest35	U35_1374	2632	3e-25	2453 - 2512	100	60 / 60	plus

Contig Sequence (2632 bp)

>U35_1374 2632 Hv_44K_v2
CAGGCTAGAGTCCGGTCCGGAATTCCTCTTTTTTTGTTGGCCTACTAACCGGTTACATCC
AAGAAATATGATATAGTTGCTGAGAAGGATCATTATAAGTTCAACCGTTTGGAGAATTTC
ATGATTTTGCCAAATATGGAAAGCATTGATGATATCAAATCAGTTCGATATGATGTATGT
GGTGTTGTTCAAACAGTAACTCCAAACTCCAAAGCCATGGTAACTTTAACACATGGGCCT
GAAAATGTAAAGCCGCGGAGGAAAATGGTCAGCGAAAATGGAAGATTCTGCTTTGAGGTT
TCTACTGGTGAATACCGATTATCTGCTTTACCTGTAGATTCCGAAGGTTCTTCCAGTCTT
TTGTTTTCTCCAGGATATATCGATGTCTATGTCAAGCGCCCGTTGCTTGATGTACAGTTC
TCTCAGTCACAAGTCAATGTTCATGGTAAGATCCTCTGCAAAGAGAAATGCGACCAAGAT
ATTCTGCTCTTGCTTGTTAGATTAGCTGGGGGTGTTGAGCATGAAACAAAGACAACCAGT
TTGGAGCAAGATAATGCTCACTTTTTTTTCACAAAAGTATTTCCTGGAAAATATCATCTG
GAGGTTAAACATTCTTCATCCAAGGCTGCTGCAAACGATGATTGGTGCTGGGACGAAAAT
ACCTTGGATGTAGATGTCGGGAATGATGATGTGACAGATATTGTATTTGTACAAAAGGGT
TATTGGATAGAGCTAGTCTCAAGCCATGACACTGCAGCATACATTCGTCAACCAGACTCT
TCTAAACTTGAATTGTTGATAAAGGAAGGGTCACAAAAGATTTGCATCGAAACTCCTGGG
CAACATGAGCTTTATTTAGTTAATTCTTGCATTTCCTTTGGGACCTCGCCTATTGTGTTT
GATACACAGAACCCAGTGTTGGTTCACATCAGTGCAAAGAAGTATCTTGTAAGAGGTGAA
ATCCATGTGGACATAAGCTCCCCTCTGGAAGAGATTGATTTATTAGAAGATATCGTTGTT
GATACCTTCAAGAGTAATGGGAGCTCAATCGACAAAATATCTACCATGCCTGTTTTTGCA
AAGAGTTATCAAAATGGTATTACTGTCTTTGAGTACTCTACTTGGACTGATCTTGGGGAA
GACTTCATTTTTGTCCCTCGTGATTCCAGCAATAGAAGGAAAAAGATCCTATTTTATCCA
TCACGGCATCAGTTCTCAGTGTCTACAAACGGATGCCAAGATGCTGTTCCTTCAATCACT
GCTAAAATGGGTCTATACCTTGAAGGATCAGTGTCACCTGCAACTCCTGATGTTCACATC
ACGATTCTGGCAGCTGGAAATAGCAAGTATGCGATGCTGAAGAAAGGTGATATAGCAACA
GAGACAAAGACAAATTCCGATGGGTCATTCTTTGCAGGGCCCTTGTATGAGGATATAGGA
TATGAAGTTGAAGCCTCAAAGGCTGGCTATCATCTCAAGCAAACTGGGCCATACAGCTTT
GCTTGTCAGAAACTTGGTCAGATATTAGTTCATATTTATGGCGAAAAGGATACAGAGATA
TTGCCGACAGTATTATTATCCTTGAGTGGTGAAGGAGGTTACAGAAAAAACTCAGTCAGT
GGTTCTGGTGGAACTTTCAGCTTTGATAACTTATTTCCTAGGAGTTATTATCTCCGCGCT
CTTCTTAAGGAATTTAAATTTACTCCATCAACAGTTGCTATTGATCTCAATTCTGGGGAG
TCTAGAGCGGTTGAGTTCCGTGCAACCCGTGTTGCCTTCAGTGCCATGGGTTCTGTAACA
CTGTTAACTGGCCAACCAAAGGAAGGTGTTTTTGTTGAAGCTAGATCTGAATCAAGAGGT
TATTACGAGGAAGCTACTACAGATTCTCTTGGTAGGTTCCGTTTGAGAGGACTTATCCCT
GGCTCATCTTACTCAATAAGAGTAGTTGCAAAAGATAATCCCAGGTTGGCAGCAGTTGAG
CGTGCTTCGCCAGAATCTGTATCAGTTGATGTAGATGAGGAGGACATCTCTGGTATTGGT
TTTGTGGTTTTTGAACGCCCAGAAGCAACAATTTTGGGCTGTCACGTGGAAGGAGATGGC
ATTGATATGTTGCAGCCACATTTATCTGTTGAAATTAGATCAGCTGTTGACCCTTCTAGA
ATAGAATCTGTGGTTCCTGTTCCTCCTTCCTACCACGTTGAAGTAAGAAATTTACCCGAA
GGAAAGCATTTTGTTCAGCTTCGGTCTGGCCTTCCATCACATACCAATATATTTGAATCG
GAGTTGGTTGAAGTTGACCTAGAAGAGCAACCTCAGATTCATGTTGGTCCTCTTAAATAT
AAAACTGAAGAGCGGCATCACAAACAGGAACTGACCCCAGCCCCAGTTTTACCTCTTATT
GTTGGAGTTTCTGTTGTTACAGTCGTGATCAGTATGCCAAGGAACTGCTTTTATATGATA
TCATGATGCTATAGGTTGAAGGACTTGTACCAGAGCGCTGTAGGAATGACTTCCCTAAGT
TCAGGAAACACACCGAGCAGAAAGGAACCACGGAAGACAATATTGAGAAAGAGAGCCTGA
AACATATGATCCTGATTAGGCGTGGAAAATTGAACTTACAGGTTGAGTACGT

Homology of Contig U35_1374 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	Description
Rice v7	LOC_Os01g19470.1	1194	protein\|nodal modulator 1 precursor, putative, expressed
Brachypodium v1_2	Bradi2g11490.1	1204
Arabidopsis v10	AT3G62360.1	1227	Carbohydrate-binding-like fold \| chr3:23073020-23080455 REVERSE LENGTH=1227