barSeed - Barley Seed Development Database

Probe CUST_7663_PI390587928

Source Contig U35_1377

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_7663_PI390587928	Hv_44K_v2	CCCTTTGGTTAGTGAGCTTCATTCAGTCACAGTAGTAATATGAACAATAATGGTATGAAA	1726	GeneList: green MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.416	1.516	1.257	0.868	0.266	0.218
Raw	1656.203	2847.040	2006.880	2150.457	237.619	210.733

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
JLOC1	JLOC1_47003.1	1293	6e-21	1221 - 1279	97	57 / 59	plus
Harvest21	ABC04481	1809	1e-24	1729 - 1787	100	59 / 59	plus	ABC04481
Harvest21	ABC04482	1355	6e-22	1282 - 1341	97	58 / 60	plus
Harvest35	U35_1377	1802	3e-25	1727 - 1786	100	60 / 60	plus

Contig Sequence (1802 bp)

>U35_1377 1802 Hv_44K_v2
GGTTAAATACCGGCACCACCCCATCGAAGCCCGCCGTACCACCGACATCGCCGCCGGATT
AGAAAGATAACCCCAGCCCAAATCCAACCAGACCCGATCCCCACGCGCATTCCCCGTCCC
GTCGCGGATCCGACCGTCCACCCGACCGCGCCGCGCGACCGCCGGGGGAGCGAGGGAGAG
CATGGCGAGCGGGGGCAGGGTGGATCTGGACGGCGGCGCCGTGGCGCCGCTCACCATCTG
CATGATCGGCGCCGGCGGCTTCATCGGCTCCCACCTCTGCGAGAAGCTCATGGCCGAGAC
CCAGCACGTCGTCCTCGCCGTCGACGTCTACTCCGACAAGATCCGCCACCTCGTCGACCC
GCCGCCGCCCCACCTCGCCGGGCGCATCTCCTTCCACCGCCTCAACATCAAGAACGACCC
CCGCCTCGAGGGCCTCGTCAAGATGGCCGATCTGACGATAAACCTGGCGGCGATCTGCAC
GCCGGCGGACTACAACACGCGGCCGCTCGACACCATCTACAGCAACTTCATCGACGCGCT
CCCGGTGGTCAAGTACTGCTCGGAGAACGGCAAGCGTCTGATCCACTTCTCCACGTGCGA
GGTCTATGGCAAGACCATCGGCAGCTTCCTCCCCAAGGATCACCCCCTCCGCAAGGAAGC
TGAATTTTATGTGCTGACAGAAGATGAGTCACCCTGCATCTTTGGTCCAATTGTGAAACA
GAGATGGTCCTATGCGTGCGCAAAGCAGCTTATTGAAAGGCTTGTTTTTGCTGAAGGCGC
AGAAAATGGCCTTGATTTCACGATTGTGAGACCTTTCAATTGGATTGGGCCAAGGATGGA
CTTCATTCCTGGCGTTGATGGTCCTAGCGAGGGTGTTCCTCGGGTTTTGGCTTGCTTCAG
CAACAATCTCTTACGCAGAGAGCCCCTGAAGCTCGTCGATGGCGGCGAGTCCCAGAGAAC
TTTTGTTTACATCAAGGATGCCATTGAAGCTGTTCTTCTGATGATTGAAAACCCTGCTCG
AGCCAATGGTCATATATTCAACGTTGGGAACCCTGACAATGAAGTCACTGTTAGGGAGTT
GGCTGAAATGATGACAGAGGTCTATGCTAAGGTCTCAGGAGAGCCCCCGCTGGAGGAGCC
TGTGATCGACGTGAGCGCGAAAGAATTCTACGGCGAAGGGTACGACGACAGCGACAAGAG
GATCCCCGACATGACCCTGATCAACAAGCAGCTAGGGTGGAACCCCAAGACCCCTCTCAA
GGACCTGCTGGAGACGACTCTGACCTACCAGCACAAGACATACAAGGAAGCCGTCAAGAC
ACAGATGTGTCTGGCCACGGCGACGCCGTCAAGCTAGACGACGACGGCACGCCCGCCTCG
GCCACGGCCCTCTTGATCTTTTGGAAGCCGGATACGGATGTCATAGTGAAACCACCGTCG
TTTTTGTCGCGCCTCTAGATCCCACCACCTATCTTCTTATCTTACCTAGATTCGTCGTTG
TGTAACCCTATATCGGGCAAAAGGGACCGAGTATCTGAGTATCTATCATACCTGTGGTGG
CAGTGTTTGTTACGTTTGGTTGGTTGCACCTCCCGTGCTATTCTTTTGCTGTTAGTAAGA
GAGAGATATATGTTCTTGTTCGGCATAGTTGATGATGATGTGAGATTACGGCCTGGCAAA
CTTTACTAGTTTTCAGCGTAGTTGATGTTGAGTTTTAAGCTTCAACCCCTTTGGTTAGTG
AGCTTCATTCAGTCACAGTAGTAATATGAACAATAATGGTATGAAAAAAAAAAAAAAAAA
AA

Homology of Contig U35_1377 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	Description
Rice v7	LOC_Os01g73790.1	399	protein\|NAD dependent epimerase/dehydratase family protein, putative, expressed
Brachypodium v1_2	Bradi2g61940.1	394
Arabidopsis v10	AT1G08200.1	389	\| Symbols: AXS2 \| UDP-D-apiose/UDP-D-xylose synthase 2 \| chr1:2574259-2576609 REVERSE LENGTH=389