barSeed - Barley Seed Development Database

Probe CUST_7662_PI390587928

Source Contig U35_1378

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_7662_PI390587928	Hv_44K_v2	GGGCAAAAGGGACCGAGTATCTGAGTATCTATCATACCTGTGGTGGCAGTGTTTGTTAAA	915	GeneList: green MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.323	1.254	1.210	0.833	0.284	0.235
Raw	12830.010	18967.967	16051.400	16969.007	2129.237	1896.037

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK361409	1691	2e-23	1483 - 1540	100	58 / 58	plus	ABC04481
MLOC	MLOC_70800.1	2011	2e-23	1718 - 1775	100	58 / 58	plus	ABC04481
JLOC1	JLOC1_47003.1	1293	1e-23	1009 - 1066	100	58 / 58	plus
Harvest21	ABC04482	1355	4e-24	1070 - 1127	100	58 / 58	plus
Harvest21	ABC04481	1809	4e-24	1517 - 1574	100	58 / 58	plus	ABC04481
Harvest35	U35_1378	1031	3e-25	916 - 975	100	60 / 60	plus
Harvest35	U35_1377	1802	4e-24	1515 - 1572	100	58 / 58	plus

Contig Sequence (1031 bp)

>U35_1378 1031 Hv_44K_v2
GGTCTATGGCAAGACCATCGGCAGCTTCCTCCCCAGGATCACCCCCTCCGCAAGGAAGCT
GAATTTTATGTGCTGACAGAAGATGAGTCACCCTGCATCTTTGGTCCAATTGTGAAACAG
AGATGGTCCTATGCGTGCGCAAAGCAGCTTATTGAAAGGCTTGTTTTTGCTGAAGGCGCA
GAAAATGGCCTTGATTTCACGATTGTGAGACCTTTCAATTGGATTGGGCCAAGGATGGAC
TTCATTCCTGGCGTTGATGGTCCTAGCGAGGGTGTTCCTCGGGTTTTGGCTTGCTTCAGC
AACAATCTCTTACGCAGAGAGCCCCTGAAGCTCGTTGATGGCGGCGAGTCCCAGAGAACT
TTTGTTTACATCAAGGATGCCATTGAAGCTGTTCTTTTGATGATTGAAAACCCTGCTCGA
GCCAATGGTCATATCTTCAACGTTGGGAACCCTGACAATGAAGTCACTGTTAGGGAGTTG
GCTGAAATGATGACAGAGGTCTATGCTAAGGTCTCAGGAGAGCCCCCGCTGGAGGAGCCT
GTGATCGACGTGAGTGCGAAAGAATTCTACGGCGAAGGGTACGACGACAGTGACAAGAGG
ATCCCCGACATGACCCTGATCAACAAGCAGCTAGGGTGGAACCCCAAGACCCCTCTCAAG
GACCTGCTGGAGACGACTCTGACCTACCAGCACAAGACCTACAAGGAAGCTGTCAAGACG
CAGATGTGTCTGGCCACGGCGACGCCGTCAAGCTAGACGACGACGGCACGTCTGCCTCGG
CCACGGCCCTCTTGATCTTTTGGAAGCCGGATACGGATGTCATAGTGAAACCACCGTCGT
CGTTTTTGTCGCGCCTCTAGATCCCACCACCCATCTCTTATCTTACCTAGATTCGTCGTT
GTGTAACCCTATATCGGGCAAAAGGGACCGAGTATCTGAGTATCTATCATACCTGTGGTG
GCAGTGTTTGTTAAAAAAAAAAAAAAAAAGTTGGTTGCACCTCNCCGTGCTATTCTTTTG
CTGTTAGTAAA

Homology of Contig U35_1378 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os01g73790.1	399	4e-156	protein\|NAD dependent epimerase/dehydratase family protein, putative, expressed
Brachypodium v1_2	Bradi2g61940.1	394	2e-159
Arabidopsis v10	AT1G08200.1	389	2e-145	\| Symbols: AXS2 \| UDP-D-apiose/UDP-D-xylose synthase 2 \| chr1:2574259-2576609 REVERSE LENGTH=389