barSeed - Barley Seed Development Database

Probe CUST_7660_PI390587928

Source Contig U35_201

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_7660_PI390587928	Hv_44K_v2	TCGTGTGTCTGATAGGCTCAACTGGGGTCTTAGCATATATTCAGAAGCAAGCGTTGTTTA	948	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK251601.1	1302	6e-24	1241 - 1299	100	59 / 59	plus	ABC01481 ABC01482 ABC42385 ABC42763
JLOC1	JLOC1_9570.2	2559	3e-24	2353 - 2411	100	59 / 59	plus
JLOC1	JLOC1_9570.1	2309	3e-24	2103 - 2161	100	59 / 59	plus
Harvest35	U35_201	1008	3e-25	949 - 1008	100	60 / 60	plus

Contig Sequence (1008 bp)

>U35_201 1008 Hv_44K_v2
ACTCACCCCCTGGATCAGCCCGAGCGGAGAGGAGAGGCGGTTTGCAGATTGATTGAGGAG
GTCGAATATCAGTCCCGCCGGCGATCAGATCGCCACGGCCACAATAACCATAGGAAACCT
AGGCACATCGTCGTCCCCGCTCGCAGTTTCTCCTTGGCGCCGCCGTCCATCTGACTGCTC
CGTAAGCCCGCGCTTCAGTGGAGATGCAGAGGACGGTGGATTTCAAGCTCCCCCACTTCT
TCAACTACCCACCCTACTTTACTTTGCAGCCCGTGAGAGAAACACGCGAAAAGCAAGTGC
AGCTATGGAAAGAGCTGATACTTGATTACTGTAGAAGTCAAAAGATGTATATAATCTCCC
TGGAAGAAGATTTTCCGTTGTTTTCCAATCAAAAGATTGAGAGATCTCTAAGTTATGAAG
CAAAGGAAGTGTTCCTTGCAGCTCTTGTTAGTGAAGGGCGCGCAGAGTGGATTGACAAAA
GTCACAAGAAGTGTCTCATTCTTTGGCTGCGAATTCAAGATTGGGCTAACTATATATTAG
ACTTCGTAAAGGAAAATGGGTTGGAAGTAACAACAATTGAAGATCTACGCTCTGGAATTG
AAACACATGGGACCGAACTTGCGGGAATTGATCGTGGTGTCCTCATGCGAGCTTTGAGGC
TGTTGGAACAGAAGGGAAAGGCAGTTATCTTTAAGGGCACGTCAGCAGACGATGAAGGCG
TGAAATTTTCTGCCTAAACTTTGTTTGCACTAACAGATGAACAACCTTGATCGGTGTCCT
TGAACGTGATACAACCCTTCTTACCCGTACACCGATCACATCCTTCTGGCGTATTTATCG
GCATCATTGAAACCTCAGTATGTATTTGCCGTATTTGTATTTCTCGGACTGTTGTAATTA
GCCTTCTGTTCATCTTCAGCATATTTTATATACCTATGAAACCGCATGTCGTGTGTCTGA
TAGGCTCAACTGGGGTCTTAGCATATATTCAGAAGCAAGCGTTGTTTA

Homology of Contig U35_201 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os01g46932.1	180	4e-108	protein\|vacuolar protein-sorting-associated protein 25, putative, expressed
Brachypodium v1_2	Bradi1g30450.1	178	5e-111
Arabidopsis v10	AT4G19003.2	179	3e-93	\| Symbols: VPS25 \| E2F/DP family winged-helix DNA-binding domain \| chr4:10407571-10408582 REVERSE LENGTH=179