barSeed - Barley Seed Development Database

Probe CUST_7652_PI390587928

Source Contig U35_1384

barSeed

Links

Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_7652_PI390587928	Hv_44K_v2	ATGTTTGAGCCGACTTGCTTGCTGTTAATGTTCAGTTTACGCGGATCTTCTACTTGCAAA	1892	GeneList: turquoise MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.493	1.333	1.166	0.919	0.406	0.362
Raw	3123.637	4317.923	3362.993	4139.150	647.854	624.528

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK356113	2011	2e-23	1873 - 1930	100	58 / 58	plus	ABC05642 ABC05643
MLOC	MLOC_64361.1	1607	9e-22	1461 - 1518	98	57 / 58	plus	ABC05642 ABC05643
JLOC1	JLOC1_42258.1	1607	5e-22	1461 - 1518	98	57 / 58	plus
Harvest21	ABC05643	446	3e-25	373 - 432	100	60 / 60	plus	ABC05643
Harvest21	ABC05642	1735	6e-22	1680 - 1733	100	54 / 54	plus	ABC05642
Harvest35	U35_1384	1966	3e-25	1893 - 1952	100	60 / 60	plus

Contig Sequence (1966 bp)

>U35_1384 1966 Hv_44K_v2
TCGAGCACTGTTGGCCTATGGATCCGGGGTCTCCCCTTCTCCGTCACACCTACCAGCAGA
GAGGAGAGGAGAGGAGAGGGATCTCTCTCTGCTCCCCGCCTCCCCATCCATGGCGGCGCC
GAGCTGGATCCGGCTGCCACGCGCCACCATAATCCTGCTCCTGCTCGCCCTCCACCTCTC
CCTCTCCCTCGCCGCCCAGTTCGAGGGGTTCGACTCCGACGAGCTCCCCTCCTCCGCCGC
CGGCGACGTCGCGTCCTCCGACGATGATGACGAGGGGCTCGACCTCGACCTCCCGCCCCC
TCCGCCCATCTCCGTCTCCGTCTCCGCGCCTTCCCCTCCCGTGACCACCACCATCACTGC
CGCAAACCCTAGCCTTAACCCCAACCCCGCGACCACGCCCCCGAATCCCACCCCCTCGCT
CGATTTCTGGGACGAGGACGAGTTCGAGGGCATCCCTGTCCCGGAAGCGGCGGTCTCCGG
CGACTCCTCCGCGCCGGCCGAGTCCGCCCCGTCAGATCCCTCTGCTGAGGAAGCGGCCGA
GGCGGCGCCGGCCACGCCGAGGGGCCCGGCGGAGCTCATCCGCGCGTTCGCCGTCGAGAT
CGCGTGCGTCAGCTTCCTGATCTGCTTCGTGCTCAACTACTTCACTGGGAAGCGGCAGAA
CGAGGCGATCGCCCTCGCCTGGGCCACCAAGTTCGCCACCAGAGACTCCATCTTCGACAA
GAACTTCAGCCTCCTTGGCACCGGCGACGGGAAGGATACACCTCTCCTCCTCAAGGAAGG
ACAGGACGTGTTCAAGTTCTACGCCAGCGGCAGGCGGTTCTGCCAGGGGGTGCTCGCCAC
CATGGAGATGCGTGCGCGGCATGACCTGCTGACAAAGCTGCTGGAGCTCGTCTTCCCCAG
GAAGGATACCATCACGTTCGAGGTGGTGATGAACGAGGAAGCCATGGACCACGTGATGGT
GGCCGTGGCTAGGAAGAAGGCGGCCAAGGCGATGCAGAAGGAGGAGAGGGATCTGCAGAA
GTTTGCCTCTGTTCTCGCTTCTGCACCTGCTGGGAAGAAGTGGGTTGCAGATGAGCTTTC
AGTGGTTGCTGAGTCAAAGGAGGTTGCTGGGGATATGATCACTGAGGCTGTGCTGGATCA
GGTGCTTGGTGAGAAAGCATTCGAGAAAATGGGAAAGTGGTTCATCTCACTTCATTTTTC
AGATCAATTGGCAGGCTCTTACAAGAAAGTCCTCTCGTTCAAGTTTGTGCTGCCAGATGC
AAACAACATGGCTGATATGACAAAATTAGTTGCTCTTGTGCCATTCTACATTGATTTGGT
TGGACGTTACAAGCTGAGCTCACATGCACGCTCGAAAACTGATGCTGCTAGGACAAAGGC
TGCCCAGGAGGCTTTCAGGGAGCTTCAGGGTGTGAGGCAGGAAACCCTGCTGAGGAAAAA
GGCTGAAAAGAAAAAGCTTATGGAAGAGGCAGAGGCCAAACTGAGCGCCGAGGTACTCCG
GAAGAAAGAGGAGAAAGAACGGAATCGGCAGATGAAGAAGGGGGCGCCCAAAGTTAAAAT
GCTGCGGTCTTAATAACATGAAGAATCTGTCGTAGTTACTGGCTTCGCTGTTCACTCGCT
TATTAGCCAATCTATAGTTCAGCATCGTCTAGACTCTTTTATGTTCCAATTTTGGGCCAT
CAGGGTCCGTGTTACGAGAATCAAGCGCAAGGAAGAAAAAAAGAAATGCTGACAAAGATG
CTGCGGTGCACTTTGGTTCACTCTTATCCGATTCGTGTACACAGCACAACAGCTCATTTG
TAAGGAAAAACTCAAGAAGACACTTCCCCGATTTGCTGTGTAATACGTTGATAGATCTGT
GGTCAGAAACTACACTTGGATCACGTGGTTTTATGTTTGAGCCGACTTGCTTGCTGTTAA
TGTTCAGTTTACGCGGATCTTCTACTTGCAAAAAAAAAAAAAAAAA

Homology of Contig U35_1384 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os05g35710.2	491	0.0	protein\|coiled-coil domain-containing protein 47 precursor, putative, expressed
Brachypodium v1_2	Bradi2g24290.1	489	0.0
Arabidopsis v10	AT4G24330.1	478	1e-131	Protein of unknown function (DUF1682) \| chr4:12603848-12606229 REVERSE LENGTH=478