- Probe CUST_7651_PI390587928
- Source Contig U35_208
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_7651_PI390587928 | Hv_44K_v2 | TCAAATGGAAGCAATCAGAACGTTGGTGGTGCAGTCCGTTCCATCCATGTGCAACTTTAA | 847 | GeneList: black MasterList: Hordein_Function_Probe_Module |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 0.016 | 0.010 | 0.323 | 1.802 | 3.182 | 4.119 |
| Raw | 133.552 | 112.803 | 3885.440 | 30434.567 | 20125.067 | 28534.633 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | MLOC_45609.1 | 564 | 7e-23 | 217 - 276 | 98 | 59 / 60 | minus | ABC00518 ABC00817 ABC28944 ABC32433 ABC43834 |
| JLOC1 | JLOC1_29606.1 | 580 | 4e-23 | 233 - 292 | 98 | 59 / 60 | minus | |
| Harvest21 | ABC52731 | 600 | 1e-23 | 358 - 417 | 98 | 59 / 60 | plus | |
| Harvest21 | ABC52722 | 643 | 1e-23 | 556 - 615 | 98 | 59 / 60 | plus | |
| Harvest21 | ABC43834 | 311 | 1e-23 | 219 - 278 | 98 | 59 / 60 | minus | ABC43834 |
| Harvest21 | ABC00817 | 1613 | 1e-23 | 1166 - 1225 | 98 | 59 / 60 | plus | ABC00817 |
| Harvest35 | U35_208 | 918 | 3e-25 | 848 - 907 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_50535 | 600 | 1e-23 | 358 - 417 | 98 | 59 / 60 | plus | |
| Harvest35 | U35_50529 | 643 | 1e-23 | 556 - 615 | 98 | 59 / 60 | plus | |
| Harvest35 | U35_22 | 1147 | 1e-23 | 842 - 901 | 98 | 59 / 60 | plus |
Contig Sequence (918 bp)
>U35_208 918 Hv_44K_v2 TTACATAACTAGAGCACAAGCACCATTACTAAGAAAGGTTTAGCTAACACAAATCCACCA TGAAGATCTTAATCATCCTTACAATCCTTGCCATGGCGACTACCTTCGCCACCTCTGAGA TGCAAGTCAACCCTAGTGTCCAAGTACAACCGACACAACAACAACCATATCCCGAGTCTC AGCAACCATTCATCAGTCAATCACCACAACAATTTCCCCTGCCACAACAACCATTCCCTC AGCAACCACAACAACCATTTCCTCAATCCCAGCAGCAATGCCTCCAGCAACCACAACACC AATTTCCCCAACCCACACAACAGTTCCCCCAACGGCCACTACTACCGTTTACCCACCCGT TCCTACCATTCCCCGACCAACTACTCCCTCAGCCACCACACCAATCATTCCCCCAGCCCC CACAATCATACCCTCAGCCACCGTTACAACCTTTTCCTCAGCCCCCGCAACAAAAATATC CCGAGCAACCACAACAACCATTTCCTTGGCAACAACCAACTATTCAGCTATATCTCCAAC AACAACTGAATTCGTGCAAGGAGTTTCTCTTGCAACAGTGCAGGCCTGTGTCATTGTTAT CGTACCTCTGGTCAAAGATCTTGCAACAGAGCAGTTGTCGGGTGATGCAGCAACAGTGTT GCCTGCAATTGGCACAGATCCCTGAACAATACAAATGCACAGCAATTGATAGCATTGTGC ATGCCATCTTCATGCAGCAAGGCCAAAGACAAGGCGTGCAGATCGTGCAACAACAACCTC AGCCGCAACAGGTGGGTCAATGTGTACTCGTCCAGGGTCAGGGCGTCGCCCAACCGCAAC AACTAGCTCAAATGGAAGCAATCAGAACGTTGGTGGTGCAGTCCGTTCCATCCATGTGCA ACTTTAATGTCCCACCTA
Homology of Contig U35_208 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | None | |||
| Brachypodium v1_2 | None | |||
| Arabidopsis v10 | None |