barSeed - Barley Seed Development Database

Probe CUST_7644_PI390587928

Source Contig U35_210

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_7644_PI390587928	Hv_44K_v2	GAACATCACGTGGCTTCCTTTAGAAATAGGAACGCTACCGAACTAATATGGTATGAGAGT	1119	GeneList: tan MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.214	0.730	1.382	1.632	0.995	0.890
Raw	3.287	26.195	43.911	88.485	17.718	17.762

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
Harvest35	U35_210	1182	3e-25	1120 - 1179	100	60 / 60	plus

Contig Sequence (1182 bp)

>U35_210 1182 Hv_44K_v2
ATAAATTTGGCCCTCCACCGCCAGTCTGCCACTCACAGAAGCACTTAGCACGATGAAGAT
TGCCATTGCAGCAGCAGCAGCCGCTCCCCTCCTCCTGCTCCTGGCCCTGGCCGGCACGGC
CCGCGCCGTGACTTTCGACGCGACGAACACGGTTCCGGACTCGGCCGGCGGCCAGAGATT
CAACCAGGACGTTGGCGTCGACTACGCCAAGCAGGTGCTCTCCGATGCCTCGTCCTTCAT
CTGGACCACCTTCAACCAGCCCAACCCGGGAGACCGTAGGGACTACGACTCGGTCACCCT
CGCTGTCGTCGACAACATCGAGCCTGTGGCCCAGACCGTCGGCAACGCTATCCAACTCCG
AGCCCAATACGTCGCCGGCTTCGACGGCGACGTCAAGCAAGAGGTGAAAGGCGTACTGTA
CCACGAGGCGACGCACGTGTGGCAGTGGATAGACCACTACGGCGAAAAACCGGGGCTCTT
CGAGGGGATCGCCGACTACGTGCGGCTCAAGGCCGACCTCGCGCCGGGGCACTGGGTGAA
GGACGGGGGCGGCGACCGGTGGGATCAGGGGTACGACGTGACGGCCAGGTTCCTGGACTA
CTGCGACTCGCTCAAGCCAGGGTTCGTGGCGGAGATGAACGGCAAGCTCAAGGATGGCTA
CAGCGACGACTACTTCGTGCAGATCCTGGGGAAGAGCGTGGACGAGCTGTGGAGCGACTA
CAAGGCCAAGTACCCCCAGCCCCAGAGCTGATGGTCGACGTACGATGCATGCAGTTTATT
GTTGTATGTGTACCGGTATACATCGACGTTCGAACTGATCCAGTATACTTGTGTTAGAAC
ACAGTTGCTGTATTGACTGGAGCGGAATAAATTGACGTTGGCACGGTGTGTGTTAACGAA
CTGAGGAGACAAATGGTGTCACGAGGGAGAGAAGAGTTCTTGTCTTAGATACTACTCCAT
TGCCGTGCATCGAGAGTGTTAGACGTATTAGCATTGAACTCTTATTGTAATCTTAACCTC
CTTTCGTTTCCTAGCAGGACTCCTTGTAATGATCTGATCAGGAGATCGATCTATGTTTTT
GTGTAAGCTATGACGAGGGCTTCTCGTCCTAATATAAATGAACATCACGTGGCTTCCTTT
AGAAATAGGAACGCTACCGAACTAATATGGTATGAGAGTCAA

Homology of Contig U35_210 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os10g34910.1	234	1e-82	protein\|secretory protein, putative, expressed
Brachypodium v1_2	Bradi3g29720.1	231	5e-103
Arabidopsis v10	AT2G15220.1	225	1e-70	Plant basic secretory protein (BSP) family protein \| chr2:6608689-6609366 FORWARD LENGTH=225