barSeed
Links

Probe Details

Probe IDChipProbe Sequence (60 bp)Probe locationDifferentially Expressed
CUST_7639_PI390587928Hv_44K_v2TATTTAGGCTTGAGCACAAGTTCTGTGTTGTCGTGACGTAAGCCTGAAATGGATCAATTT846GeneList: midnightblue
MasterList: None



Probe Values

3 dpa4 dpa5 dpa6 dpa7 dpa8 dpa
Normalized 0.0100.0110.4991.6771.7233.100
Raw 27.755207.31211939.64760212.96722155.66743115.400



Probe Sequence's BLAST hits in Barley Unigene Datasets

DatasetHitHit LengthE-valuePosition on Hit% IdentityMatchDirectionProbes on Sequence
JLOC1JLOC1_15410.118268e-25907 - 96610060 / 60plus
Harvest21ABC002549063e-25823 - 88210060 / 60plusABC00254
Harvest35U35_2149303e-25847 - 90610060 / 60plus



Contig Sequence (930 bp)

>U35_214 930 Hv_44K_v2
TGAACACGTAACATTTACCTACAACAACCATCGCTTGGACATCCTGTGTGCCACAACCAC
CATCTCCTATAACTAAGAGCCATCCAAGCCTAGTCTCAGTAATCCCATCAGCCAAAGCCT
GTGTTGTACAAGACAGCCAACCAGCCATGGGCCTCAAGGGTGTGATGGTGTGTTTACTTA
TACTGGGGTTGGTTCTCGAACAGGTGCAAGTAGAAGGCAAGAGTTGCTGCAGGAGCACCC
TAGGAAGAAACTGCTACAACCTTTGCCGCGTCCGTGGTGCTCAGAAGTTATGCGCAGGCG
TCTGTAGGTGTAAACTCACAAGTAGCGGAAAATGCCCTACAGGCTTCCCCAAATTGGCCC
TTGTGTCCAACTCAGATGAACCAGACACCGTCAAGTATTGCAACTTGGGGTGTAGGGCTT
CCATGTGTGACTACATGGTCAACGCAGCTGCTGACGACGAAGAAATGAAACTCTATTTGG
AAAATTGTGGTGATGCTTGTGTCAATTTCTGCAACGGTGATGCTGGCCTCACATCCCTTA
CTGCCTAATGATGTGTATCCATGGTCTGAGATTTCACAGGGCAAGGTGTGTCTGACCTTT
GCGTTCAATAAAATTGGATCCCATCGAGAGTATCCAAACCAGTGTGTCAACCTGTTTTAT
GTGTGTGTATTTCCATTCCTTGTTCGAATAAAAGCCGTCATAATGAATGCCATGTTGCTG
CCGTGAAGTACCGCCATGACTGAGATAAAATGGTACATGTTGTATTATTTGCCTGTGGAT
ATAAACTTCATGAGTACATGCTTCAAGTAAAAAAAAAAAAAAAAAAATTTTCTCTAGTCC
TTTTTTTATTTAGGCTTGAGCACAAGTTCTGTGTTGTCGTGACGTAAGCCTGAAATGGAT
CAATTTTTTTGCAAAAAAAAAAAAAAAAAA



Homology of Contig U35_214 to Model Species (E-value threshold 1e-50)

Pseudo-peptide datasetHitHit lengthE-valueDescription
Rice v7None
Brachypodium v1_2None
Arabidopsis v10None