- Probe CUST_7636_PI390587928
- Source Contig U35_1392
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_7636_PI390587928 | Hv_44K_v2 | ATCAACCAGATCCACCAGCACCTGTGCGCGTTCCACTTCTACGGGGACGACATGACGCGG | 150 | GeneList: darkolivegreen MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 0.107 | 0.133 | 0.533 | 2.096 | 1.691 | 3.195 |
| Raw | 6.113 | 12.327 | 47.030 | 298.744 | 80.784 | 165.481 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | MLOC_62259.1 | 1099 | 2e-24 | 150 - 209 | 100 | 60 / 60 | plus | ABC03594 |
| MLOC | MLOC_41030.1 | 289 | 7e-23 | 76 - 135 | 98 | 59 / 60 | minus | ABC03594 |
| JLOC1 | JLOC1_40725.1 | 1092 | 8e-25 | 166 - 225 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_26785.1 | 287 | 4e-23 | 76 - 135 | 98 | 59 / 60 | minus | |
| Harvest21 | ABC03594 | 1152 | 3e-25 | 151 - 210 | 100 | 60 / 60 | plus | ABC03594 |
| Harvest21 | ABC03595 | 639 | 1e-23 | 122 - 181 | 98 | 59 / 60 | plus | |
| Harvest35 | U35_1392 | 615 | 3e-25 | 151 - 210 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_1393 | 1124 | 1e-23 | 122 - 181 | 98 | 59 / 60 | plus |
Contig Sequence (615 bp)
>U35_1392 615 Hv_44K_v2 ATACTCGAGCGCTTTCCCTAGCTACCACAAAGCTCGCGCGGCAAAAAGATGGCGGCCTCC TGCCACGACGTGGACGTCCCCGGGAAGGCGACGGAGACGGGCACGGCGCTGCTGGAGACG GCGACGGGCGCCATCCAGGGGTTCGGCCCCATCAACCAGATCCACCAGCACCTGTGCGCG TTCCACTTCTACGGGGACGACATGACGCGGCAGGTGGAGGCGCACCACTTCTGCGCGCAC CTCAACGAGGACGTGCGGCAGTGCCTCATCTTCGACGGCCCCGACGCCGGCGCGCGCCTC ATCGGCCTCGAGTACATCGTCACCGAGGAGCTGTTCCTCACGCTGCCCGACGAGGAGAAG CCGCTGTGGCACACCCACGAGTTCGAGGTCAGGGGCGGCGTGCTCTTCATGCCCGGCGTG CCCGGCGTCGTCGAGCGCCGCGACCTCGAGAAGGTGGCCAGGACCTACGGCAAGACCGTC CACTTCTGGCAGGTCGACCGCGGCGACGCCCTCCCGCTCGGCGTGCCCCAGATCATGATG GCCCTCACCCGGGAGGGCCAGCTCCGGCAGGACCTCGCCGACTGTGTGGAGAGGAAGTTC GGCGTGTCGTTCGAG
Homology of Contig U35_1392 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | LOC_Os05g49440.2 | 239 | 7e-115 | protein|DUF1264 domain containing protein, putative, expressed |
| Brachypodium v1_2 | Bradi5g10450.1 | 237 | 1e-121 | |
| Arabidopsis v10 | AT2G31985.1 | 241 | 3e-88 | Protein of unknown function (DUF1264) | chr2:13614086-13615619 REVERSE LENGTH=241 |