barSeed - Barley Seed Development Database

Probe CUST_7633_PI390587928

Source Contig U35_217

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_7633_PI390587928	Hv_44K_v2	TTTGAGAAGATTATTGGAAGTACCACCCCCTCTATTGGCTCATTGCGACATTTTCTTGAT	736	GeneList: turquoise MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.368	1.198	1.143	0.813	0.420	0.352
Raw	23929.733	31709.633	27393.100	29618.733	5580.703	5086.027

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_60196.4	917	2e-24	837 - 896	100	60 / 60	plus	ABC01243 ABC01248 ABC31827
MLOC	MLOC_60196.1	1956	2e-24	1778 - 1837	100	60 / 60	plus	ABC01243 ABC31827
MLOC	MLOC_60196.2	995	2e-24	824 - 883	100	60 / 60	plus	ABC01243 ABC31827
MLOC	MLOC_60196.3	1148	2e-24	977 - 1036	100	60 / 60	plus	ABC01243 ABC01248 ABC31827
JLOC1	JLOC1_39229.1	1116	8e-25	840 - 899	100	60 / 60	plus
Harvest21	ABC01251	796	3e-25	737 - 796	100	60 / 60	plus
Harvest21	ABC01243	982	1e-23	836 - 895	98	59 / 60	plus	ABC01243
Harvest35	U35_217	796	3e-25	737 - 796	100	60 / 60	plus

Contig Sequence (796 bp)

>U35_217 796 Hv_44K_v2
GCCTCGCCCTCTCTCGCCGAAGTGCCGCTCCGCTTCCGCCGAAGAATCACCAATGGCCCC
GACGTCGAAGATGGCGCTCGGCATAAAGCGGACGTCGAGGTCGCGCACCTACCACCGCCG
CGGGCTTTGGGCCATCAAGGCCAAGCACGGCGGCGCCTTCCCTAAGGCCGAGAAGCCGGC
CGCCGTCGCCGAGCCCAAGTTCTATCCCGCCGATGATGTCAAGCCACGCACCTTCAGCAC
ACGCAAGCCCCATCCCACCAAGCTCAGGTCGACCATCACGCCGGGCACGGTGCTGATCCT
GCTCGCGGGGAGGTACATGGGGAAGCGCGTCGTGTTCCTCAAGCAGCTCAAGTCCGGCCT
GCTCCTCATCACTGGACCTTTCAAGATCAATGGCGTGCCAATCCGCAGAGTGAACCAGGC
TTATGTCATTTCCACATCCACAAGGCTCGACATCTCCAAGGCAACGAAGAATCTGCCCGA
CTTCAAGAAGGATGACCAGAAGGTCATTGACACTGAGTTAATCAAGGCTATAGATGCTGT
CCCAGACCTTAAAAGTTATCTTGGTGCCCGGTTCTCCCTCAGGGATGGCGACAAGCCGCA
TGAGATGACCTTCTAAGTTATCTGGTACAAGTTTCAAGATCTGTGGAAAGTCTTTTTTCT
CTAGCGTATGTTCTGGTTCTGTACTTCTGATTTTTTTGGCTGGTTGGTGAAGCTTTGATT
TCTACCTGTTAAATATTTTGAGAAGATTATTGGAAGTACCACCCCCTCTATTGGCTCATT
GCGACATTTTCTTGAT

Homology of Contig U35_217 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os02g37862.1	220	1e-95	protein\|60S ribosomal protein L6, putative, expressed
Brachypodium v1_2	Bradi3g08900.1	220	9e-101
Arabidopsis v10	AT1G74050.1	233	4e-66	Ribosomal protein L6 family protein \| chr1:27847256-27848680 REVERSE LENGTH=233