barSeed - Barley Seed Development Database

Probe CUST_7626_PI390587928

Source Contig U35_1398

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_7626_PI390587928	Hv_44K_v2	CTTTATAAGCTGTTTATCTTTAGTAGGCATTATGGAGGACGGGCTCTATGGAGCTTTTTT	1336	GeneList: turquoise MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.411	1.381	1.312	0.846	0.371	0.295
Raw	1265.273	1933.137	1615.540	1601.735	250.432	214.622

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction
JLOC1	JLOC1_34040.4	1262	8e-25	1054 - 1113	100	60 / 60	plus
JLOC1	JLOC1_34040.3	1129	8e-25	921 - 980	100	60 / 60	plus
JLOC1	JLOC1_34040.2	1579	8e-25	1371 - 1430	100	60 / 60	plus
JLOC1	JLOC1_34040.1	1410	8e-25	1202 - 1261	100	60 / 60	plus
Harvest35	U35_1398	1421	3e-25	1337 - 1396	100	60 / 60	plus

Contig Sequence (1421 bp)

>U35_1398 1421 Hv_44K_v2
GCAGAGGTCTCATTTTAAGCGAGACCCATAGCCTCGTCAACCCATTCGTCTGCGCCGAAA
CCCCTCTCCAATCTGAGATCCCCTCACGAGTGGGACCCGAATCCGAAACCCTAGAGCAGA
GCGGGAGGGGCGGCCATGGCCATCATCTCCGACATCCAGGAGGAGGAGGCGCCGCCGTCG
CAGCAGCCGGCCCCGGCCCCGGCCCCGGCAGCGGTCGACGTGGACCTGGAGGTCCTCGAG
GCGGTGCTCGAGCGCAAGGGCGGCGCGCTCCCGTTCCTCCACGCGGCCATCGACGTCGCG
CACCGCCGCTCCGACCTCTTCCGCGACCCCTCCGCGGTCGGCAAGGTCACAGCGATGGCC
TCGGCGTGCAGGGCGCAGGTGGAGGCGGAGGAGAGGAAGGCCAGGGACGCCAAGAGGAAG
GCGGCGGAGCTGGAGAAGGCGGCGGCGGCGGCGGCGGCGGCCGAGAAGGAGAAGCGGGAG
AGCTCGGTGGTGACGGAGGGCCGGGGTGGCAGCACGGAGGTGGAGAAGGAGGAGGGCAAG
GCGAACAAACCAAATGCTGGCAATGGTCTTGATATGGAGAAGTATTCCTGGACTCAGCAG
TTATCAGAGGTTAATGTCAATGTTCCTGTTCCTGAAGGAACAAAGTCAAGGTTTGTTGTC
TGTGAGATTAAGAAGGATCGTCTGAAAGTTGGGTTGAAGGGCCAGCCTCCCATCATTGAT
GGTGAGCTTTACAAACCAGTTAAAGTTGATGACTGCTTCTGGAGCATAGAGGATGGGAAA
GCACTGTCTATACTGCTTACAAAGCACAATCAAATGGAGTGGTGGAAATCTGTGATCAAA
GGTGACCCTGAAGTTGACACCCAAAAGGTGGAACCAGAGAATAGCAAGCTTTCTGAACTG
GATCCTGAGACTAGGCAAACTGTGGAGAAGATGATGTTTGATCAGCGTCAGAAGCAGATG
GGTCTGCCAACAAGTGATGAAATGCAGAAGCAAGACATGCTCAAGAAGTTCATGTCTCAG
CACCCAGAGATGGACTTCTCAAATGTGAAGATGGCTTAAGGTGTGCTGGATCCAAGGAAA
TGCAGAAAGTTTTTTATGGAGGAATCACATCTATCCTAGTTATTTTCAGTTTGAGTGTCT
TGTGGTTTAGTGTCTGGTTATTGCTACGAATTTTAGTGTCTGATTGAGGTTTCCATTGCA
GCACCCAGAGATGGACTTCTCAAGGACACAATGTCTTGTGGCTTAGTGAACTCTGTTTTC
TGTGGTTGGAACCAATCAGTTGTCCAGTTCTCATGTTGGTGTACTTCACTTGTGCGATTT
CTAGCTACCTGCATCCCTTTATAAGCTGTTTATCTTTAGTAGGCATTATGGAGGACGGGC
TCTATGGAGCTTTTTTTCAAAATTGAAAAAAAAAAGAAAAA

Homology of Contig U35_1398 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os06g12530.1	309	1e-128	protein\|CS domain containing protein, putative, expressed
Brachypodium v1_2	Bradi1g45080.1	333	1e-131
Arabidopsis v10	AT5G53400.1	304	8e-91	\| Symbols: BOB1 \| HSP20-like chaperones superfamily protein \| chr5:21661588-21663383 FORWARD LENGTH=304