- Probe CUST_7617_PI390587928
- Source Contig U35_228
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_7617_PI390587928 | Hv_44K_v2 | AAATGCACAGCAATCGATAGCATTGTGCATGCCATCTTCATGCAGCAAGGCCAAAGACAA | 555 | GeneList: black MasterList: Hordein_Function_Probe_Module |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 0.010 | 0.010 | 0.260 | 1.800 | 2.999 | 3.398 |
| Raw | 7.160 | 8.459 | 716.212 | 7238.750 | 4358.477 | 5410.377 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | MLOC_45609.1 | 564 | 2e-24 | 372 - 431 | 100 | 60 / 60 | minus | ABC00518 ABC00817 ABC28944 ABC32433 ABC43834 |
| MLOC | MLOC_64273.1 | 1324 | 3e-21 | 890 - 949 | 97 | 58 / 60 | plus | ABC00518 ABC00817 |
| MLOC | MLOC_22460.1 | 246 | 3e-21 | 168 - 227 | 97 | 58 / 60 | minus | ABC00518 ABC00817 |
| JLOC1 | JLOC1_29606.1 | 580 | 8e-25 | 388 - 447 | 100 | 60 / 60 | minus | |
| JLOC1 | JLOC1_42189.1 | 1301 | 2e-21 | 890 - 949 | 97 | 58 / 60 | plus | |
| Harvest21 | ABC43786 | 601 | 3e-25 | 391 - 450 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC00817 | 1613 | 3e-25 | 1011 - 1070 | 100 | 60 / 60 | plus | ABC00817 |
| Harvest21 | ABC52731 | 600 | 1e-23 | 203 - 262 | 98 | 59 / 60 | plus | |
| Harvest21 | ABC52722 | 643 | 1e-23 | 470 - 529 | 98 | 59 / 60 | plus | |
| Harvest21 | ABC00810 | 837 | 6e-22 | 413 - 472 | 97 | 58 / 60 | plus | |
| Harvest21 | ABC00764 | 1235 | 6e-22 | 811 - 870 | 97 | 58 / 60 | plus | |
| Harvest21 | ABC00518 | 1184 | 6e-22 | 802 - 861 | 97 | 58 / 60 | plus | ABC00518 |
| Harvest35 | U35_45222 | 601 | 3e-25 | 391 - 450 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_228 | 708 | 3e-25 | 556 - 615 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_22 | 1147 | 3e-25 | 687 - 746 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_50535 | 600 | 1e-23 | 203 - 262 | 98 | 59 / 60 | plus | |
| Harvest35 | U35_50529 | 643 | 1e-23 | 470 - 529 | 98 | 59 / 60 | plus | |
| Harvest35 | U35_208 | 918 | 1e-23 | 693 - 752 | 98 | 59 / 60 | plus |
Contig Sequence (708 bp)
>U35_228 708 Hv_44K_v2 GTCCAAGTACAACCGACACAACAACAACCATATCCCGAGTCTCAGCAACCATTCATCAGT CAATCACAACAACAATTTCCCCAGCCACAACAACCATTCCCTCAGCAACCACAACAGCCA TTTCCTCAATCCCAGCAACAATGCCTCCAGCAACCACAACACCAATTTCCCCAACCCACA CAACAATTCCCCCAACGGCCACTACTACCGTTTACCCACCCGTTCCTACCATTCCCCGAC CAACTACTCCCTCAGCCACCACACCAATCATTCCCCCAGCCCCCACAATCATACCCTCAG CCACTGTTACAACCTTTTCCTCAGCCCCCGCAACAAAAATATCCCGAGCAACCACAACAA CCATTTCCTTGGCAACAACCAACTATTCAGCTATATCTCCAACAACAACTGAATCCGTGC AAGGAGTTTCTCTTGCAACAGTGCAGGCCTGTGTCATTGTTATCTTACCTCTGGTCAAAG ATCTTGCAACAGAGCAGTTGTCGGGTGATGCAGCAACAATGTTGCCTGCAATTGGCACAG ATCCCTGAACAATACAAATGCACAGCAATCGATAGCATTGTGCATGCCATCTTCATGCAG CAAGGCCAAAGACAAGGCGTGCAGATCGTGCAACAACAACCTCAGCCGCAACAGGTGGGT CAATGTGTGCTCGTCCAGGGTCAGGGCGTCGTCCAACCGCAACAACTA
Homology of Contig U35_228 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | None | |||
| Brachypodium v1_2 | None | |||
| Arabidopsis v10 | None |