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Probe Details

Probe IDChipProbe Sequence (60 bp)Probe locationDifferentially Expressed
CUST_7615_PI390587928Hv_44K_v2CTCTCTGGTCCATAACAAGGTCCCATGAATCATATTTATATTTTATTTGGAAATAAGCCC893GeneList: yellow
MasterList: None



Probe Values

3 dpa4 dpa5 dpa6 dpa7 dpa8 dpa
Normalized 2.5942.2351.3240.6930.4480.590
Raw 48.98066.83534.35530.4646.1249.323



Probe Sequence's BLAST hits in Barley Unigene Datasets

DatasetHitHit LengthE-valuePosition on Hit% IdentityMatchDirectionProbes on Sequence
Harvest21ABC008529423e-25857 - 91610060 / 60plusABC00852
Harvest35U35_2309793e-25894 - 95310060 / 60plus



Contig Sequence (979 bp)

>U35_230 979 Hv_44K_v2
TGCCTCACTGGTCACCCCTCAACTCACCAGCAGACAGACGGGTGTAACCAAAGATAAGGT
ACGCGACAGACATGGCGTGGCCACTGCTCCAGGTCCTGCTCATCGCCGCCGCCACCACCG
CGGCGGCGTCGTCCTCAGGGACTACGCCTGACGGGCCGGCGCCATGGCCGGAGCAGTTCC
ACGCGGTGCTGTTCACGAACCTGACCAACGTCTCGGTTGCGTCGACGGGCCCGCCGCTCC
GGCTGCACGACCTCTACTACGACTGGCCGCGGCGGCGCAACCTGAACCTGATCCGGCACC
AGCTGTCGGGCGACCCGCTGTACGACGTGGAGTGGAATAATGGCACCACCTTCTACTTCG
ACACGGCGACGTGCCGCACGCTGCAGGTCGCCGTCGGCGTGCTCCCCCCTGGGTGGCTCA
GCGGCGCCGCCTACCTCGGCCGCGAGACCACCGGCGGGATCGACTGCCACGTCTGGGGCA
AGGCTGGCTTCATCGTCTACTACGAGGACGCGCTCACGCGCCGCCCCGTCCGCTGGAACT
TCCTTGACGTGACGGGGATACAGCAGTTCGTGATGAGCTTCGAGGTGGGCGTGGTGCTGG
AGGACGACGACCAGTGGCAGGCGCCCGCGCACTGCTTCCTGGATGACGCGGCCAACGAGG
ATGACGATCATATCGCTGTTTCGAATGGTATCACCATGGACGCGGCCAGGCTATTCCGCA
ACTTTGCTGGAGCTGCCGCCGCCTACTGATCATGACTGAATGTGAATATGTGGTGTGTGT
TTTCGCACCTTGTATTAGTAATATTTGTTTTTGATAAATGTTATTAAGCCACTGTTTGTA
ATTTAGTTGAGCGACCAAATGAGCTCCAAACTGGCTGAAATTTTAGGTGAAGCCTCTCTG
GTCCATAACAAGGTCCCATGAATCATATTTATATTTTATTTGGAAATAAGCCCATTTAAA
TGAAAAAAAAAAAAAAAAA



Homology of Contig U35_230 to Model Species (E-value threshold 1e-50)

Pseudo-peptide datasetHitHit lengthE-valueDescription
Rice v7LOC_Os07g29240.12531e-86protein|expressed protein
Brachypodium v1_2Bradi1g28140.12291e-109
Arabidopsis v10None