- Probe CUST_760_PI390587928
- Source Contig U35_45715
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_760_PI390587928 | Hv_44K_v2 | CCGAAAAACAAGTTTGATCCATCCATTCATTGATTGATGGATTTTTCAGTCGTTTGTTAC | 39 | GeneList: turquoise MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 1.575 | 1.458 | 1.500 | 0.896 | 0.226 | 0.239 |
| Raw | 54.544 | 83.855 | 73.810 | 74.480 | 4.614 | 5.897 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | MLOC_55556.2 | 2206 | 7e-23 | 143 - 202 | 98 | 59 / 60 | minus | ABC09057 ABC09058 ABC44905 |
| MLOC | MLOC_55556.1 | 1712 | 7e-23 | 145 - 204 | 98 | 59 / 60 | minus | ABC09057 ABC09058 ABC44905 |
| JLOC1 | JLOC1_35851.1 | 1733 | 4e-23 | 1506 - 1565 | 98 | 59 / 60 | plus | |
| Harvest21 | ABC44905 | 304 | 3e-25 | 40 - 99 | 100 | 60 / 60 | minus | ABC44905 |
| Harvest21 | ABC09058 | 846 | 1e-23 | 662 - 721 | 98 | 59 / 60 | plus | ABC09058 |
| Harvest35 | U35_45715 | 304 | 3e-25 | 40 - 99 | 100 | 60 / 60 | minus | |
| Harvest35 | U35_18247 | 817 | 1e-23 | 613 - 672 | 98 | 59 / 60 | plus |
Contig Sequence (304 bp)
>U35_45715 304 Hv_44K_v2 TCCTAACAACATTTTGAAGTAAATTAAACTCCTTTTTAAGTAACAAACGACTGAAAAATC CATCAATCAATGAATGGATGGATCAAACTTGTTTTTCGGTTTTAATGCAGGCCCCGGGCA CGGTCCATTTGGCCCGGTGCCTTTCCCACGGGGGCATCCTGGTATAGTTCCTCCAATAAC CCAACACCCCCTTAAAATCCTTAATTTTATTCCCAATCCCCACCCAAAATTTCGGGTGCA TGGGGACAATTTTCCCCAAATCCTTACCATAGCTGCAAAACCCCCCGACGTAGGCCGGGT CCAG
Homology of Contig U35_45715 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | None | |||
| Brachypodium v1_2 | None | |||
| Arabidopsis v10 | None |