barSeed - Barley Seed Development Database

Probe CUST_7608_PI390587928

Source Contig U35_237

barSeed

Links

Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_7608_PI390587928	Hv_44K_v2	TTTACTACAAGGGGTGGTACCACCTCTTCTACCAGTACAACCCCGACGGCGCCATTTGGG	510	GeneList: None MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.974	0.813	0.720	0.652	1.514	1.198
Raw	3.056	3.048	3.291	5.433	4.323	3.216

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK361559	2432	2e-24	562 - 621	100	60 / 60	plus	ABC02490 ABC02491 ABC02492
MLOC	MLOC_60412.1	2569	2e-24	1662 - 1721	100	60 / 60	minus	ABC02490 ABC02491 ABC02492
JLOC1	JLOC1_39393.1	2669	8e-25	776 - 835	100	60 / 60	plus
Harvest21	ABC02494	597	3e-25	511 - 570	100	60 / 60	plus
Harvest21	ABC02490	2190	1e-23	498 - 557	98	59 / 60	plus	ABC02490
Harvest35	U35_237	597	3e-25	511 - 570	100	60 / 60	plus
Harvest35	U35_4	2256	1e-23	498 - 557	98	59 / 60	plus

Contig Sequence (597 bp)

>U35_237 597 Hv_44K_v2
CAGAGGTGATAATTTGATCAGTCCCACCGATAATTCCTCTCCCTTCTCTGGTCTCCGTCG
AGATCGAGGGCGTCCTTCTTCTCCTCCGACGATCTCTTTCCATGCCAACGATGGACACCA
CAGACCGCGGCTCCTACGCGCAGCTGCCGGACGATGCCGAGGCCGGGACCGCGCACCGGC
GCAGGACCGGGCCTCTCTGTGCCGCGATTCTCCTTACTTCGGCCGCGCTGCTGCTCGCTG
TGGCCGCGCTCGCCGGCCAGCTGCCCGTAGCCGGCGTCATCATGTCCGGCCAGCCAACGA
CAGTAGACGTGGCGCCGACGACGAGCACCAGCAGCCGGGGCCCGGAGTACGGCGTCTCGG
AGAAGACGTCCGGCGCCGGCGCCCACGGTGGCATGCTGGGCGCGGACGCCGGCAACGCGT
TCCCGTGGAGCAATGCCATGCTCCAGTGGCAGCGCACGGGGTTCCACTTCCAGCCCGAGA
AGAACTGGATGAACGACCCCAACGGTCCGGTTTACTACAAGGGGTGGTACCACCTCTTCT
ACCAGTACAACCCCGACGGCGCCATTTGGGGCAACAAGATAGCGTGGGGCCATGCCG

Homology of Contig U35_237 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os02g01590.2	517	1e-51	protein\|glycosyl hydrolases, putative, expressed
Brachypodium v1_2	Bradi3g00910.1	672	7e-53
Arabidopsis v10	None